These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1437 fasta sequence [GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTGTTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAACACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGGAGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGTTATGCA-GTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACA-GGTGGTCTAGGCC-ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACA-TTCTTTTCTATTTCTTTGAAATAGTCAGTAGGGGAAGTTTGCTTCCCCA-TGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAACGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTCTGACAATAGCATGCCGTAT] [+] EMBL AK120485 [GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATTGGCCACCCTGCTGGACTCACTGACTGTTAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTGTTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAACACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGGAGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGTTATGCA GTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACA GGTGGTCTAGGCC ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACA TTCTTTTCTATTTCTTTGAAATAGTCAGTAGGGGAAGTTTGCTTCCCCA TGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAACGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTCTGACAATAGCATGCCGTAT] [+] EMBL AU065800 [ ccgAGAAGCTCAACCCAATCCCCTCCTCTNCCCCAATTCCGCCGCCGCCCCCNGCTCGGATCCNCCCCCACNCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACNGCCGGTGACTCGACNAACTCGTCTCGGTT ] [+] EMBL BM420319 [ TAGGATAGTAATCCACGNGCTCACATCATTTCCCCCTT GCTGTATTTATGAGTGGATGGAAAGAAGTGAA CATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGAC ACATAATTGTCAGACTGGCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACACGGCGGTCTAGGCCNCCCCAATACTCTGTACATACCCCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCCTCTGATATTCTTGAAATGTTGGAAGGGCGCACNAAAACACTTCTTTTCTATTTCTTTGAAATAGTCCGTAGGGGAAGTTTGCTTCCCCACTGGTTTCTTTGTGTGCCTGCGTTGCTATGTCTCGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCCCCTGAAGAAGCTGTAAATTGATGATGGCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAAaaaaaaaa ] consensusID : consensus_7587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCGCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTGTTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGA] [+] EMBL BF430555 [CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTCGGATCCTCCCCCGCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTTGCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCGAGCTGGGAGATATTGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTAGCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAACGGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTGTTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAGATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCCAGAGGAATCAGAACCACTGAGGGCAAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7587#0 GAGAGAAGAAGCTCAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTC 60 consensus_7587#1 -------------CAACCCAATCCCCTCCTCTCCCCCAATTCCGCCGCCGCCCCCTGCTC 47 *********************************************** consensus_7587#0 GGATCCTCCCCCACCCCCGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGGCTCGTCTCCTT 120 consensus_7587#1 GGATCCTCCCCCGC---CGCCGCCGGCGAGAAGGGCCCGTAGGCGCGGCCTCGTCTCCTT 104 ************ * ******************************* *********** consensus_7587#0 GCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCG 180 consensus_7587#1 GCTGATCCCGACTCCGCGCGCACGGCCGGTGACTCGACTGCCTCGTCTCGGTTCGAATCG 164 ************************************************************ consensus_7587#0 AGCTGGGAGATATTGAGGAGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA 240 consensus_7587#1 AGCTGGGAGATATTG---AGCACTTGGACTGAAGAACTCAATTTTGGAGCACTTGGATTA 221 *************** ****************************************** consensus_7587#0 GCAT---------------------TGGCCACCCTGCTGGACTCACTGACTGTTAAAA-C 278 consensus_7587#1 GCATCAGTTTTCTACCTCTGAGCATTGGTCACCCTGCTGGACTCACTGGCTGTTAAAAAC 281 **** *** ******************* ********* * consensus_7587#0 GGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTTTG 338 consensus_7587#1 GGCTCTGGTTTAAGGAGTTGTTTCTCTTGTGGTCATTCTTTGGATTATGGGAGCTCTCTG 341 ********************************************************* ** consensus_7587#0 TTCATGTTTGCAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGG 398 consensus_7587#1 TTCATGTCTACAAGCTGATTATTCCGACCACCATGGGCATCATGCTTCACCGGCATTAGG 401 ******* * ************************************************** consensus_7587#0 GGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATT 458 consensus_7587#1 GGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGTACACTGTTTTATT 461 ************************************************************ consensus_7587#0 CCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATC 518 consensus_7587#1 CCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATC 521 ************************************************************ consensus_7587#0 TGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAG 578 consensus_7587#1 TGAAAGTTCATTTGACACATATCGTTCACCCCCAAGACCACTTCCATATGATGATCCTAG 581 ************************************************************ consensus_7587#0 ATTCTCCCCTCCTCAGCGTGATTGGTTAGTGTCAAGGCATGGACCTTCATGCCATTCCCC 638 consensus_7587#1 ATTCTCCCCTCCTCAGCGTGATTGGCTAGTGTCAAGGCATGGACCTTCGTGCCATTCCCC 641 ************************* ********************** *********** consensus_7587#0 AGAGGAATCAGAACCACTGAGGGCAAATGATGACGAGGAAATGGAAACACCAAGTTCAAC 698 consensus_7587#1 AGAGGAATCAGAACCACTGAGGGCAAATGA------------------------------ 671 ****************************** consensus_7587#0 ACATAAGTCAAGTAAAACAAACTATGACACAAAAATGAAAAGAAGCAGCTCTACTCATGG 758 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 AGAGAAGCTGCCAACAAAGGAACCTGGAAATTATTTCACATACTTTTCCCCATCCGCTGA 818 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 AGATGAAGATGTCTGCCCAACTTGTCTTGAAGATTATACTTCTGAGAATCCTAGGATAGT 878 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TATGCAGTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGA 938 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 AGCATGCCCTGTTTGTGGAAAGAAAATGGAGTTTGACGAGACAACATAATTGTCAGACTG 998 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 GCCTGTATTTCTTGGATTAACAACCCTCATGGCAATCTGAAAGTACAGGTGGTCTAGGCC 1058 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 ACCAAATACTCTGTACATACACCTTGTAAGTATTGAATCAGTAGTGTGATCCTCATCGCC 1118 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TCTGATATTCTTGAAATGTTGGAAGGGCGCACAAAAACATTCTTTTCTATTTCTTTGAAA 1178 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TAGTCAGTAGGGGAAGTTTGCTTCCCCATGGTTTCTTTGTGTGCCTGCGTTGCTATGTCT 1238 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 CGGAGGCGCCTTTGATTGTCCGGTGATAGTGCCACCTGAAAAAGCTGTAAATTGATGATG 1298 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 GCCTGTGTTGATATAATCATATGAAGTTCGATGATTATGGGGAATCCTCTTTTCTCGCAA 1358 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 CGCTTGTTTGGCACCGTGATCATGTTTCATGCTATTAAAATTGTACCGGGCTTTCATCTC 1418 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TGACAATAGCATGCCGTAT 1437 consensus_7587#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||