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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1039 fasta sequence
[AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTAGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA]
[+] EMBL AK109010 [AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTTGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACT ]
[+] EMBL CF331197 [AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTC ]
[-] EMBL CF331198 [ CAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCAGCTGCTGCTGCTGCTTGAAATAAGAGACTTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTTTGAATTGTGGTTGTATTGTCTAGTGTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGCAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA]
[-] EMBL CF331194 [ CCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTAGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA]
consensusID : consensus_7598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence
[CCTCCACCTCGATCGATCCATCGCACACTAACTAACAGAGCTAAGATACGACGATGATGATGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGGCCGTGATCCTCTCCGCCGGCGCCGCCGACCCGGACATCCTCACCGACTTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAGAACCTCGTCACCGGCAACTCCGGCGACCCGGCCAAGCTCACCGTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCCGCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAGCTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGCACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTGCACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGCGCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACCATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAGGCGCCGCCTTCGCCGAGGCCCTCGCCGGGGTCCTCCTCCTCCGCCGCCGCGGCTTTGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTTACTTCTAGTGAGTTGTGAGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCATCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTTTGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATATTGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT]
[+] EMBL AK108987 [CCTCCACCTCGATCGATCCATCGCACACTAACTAACAGAGCTAAGATACGACGATGATGATGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGGCCGTGATCCTCTCCGCCGGCGCCGCCGACCCGGACATCCTCACCGACTTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAGAACCTCGTCACCGGCAACTCCGGCGACCCGGCCAAGCTCACCGTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCCGCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAGCTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGCACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTGCACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGCGCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACCATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAGGCGCCGCCTTCGCCGAGGCCCTCGCCGGGGTCCTCCTCCTCCGCCGCCGCGGCTTTGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTTACTTCTAGTGAGTTGTGAGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCATCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTTTGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATATTGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7598#0 AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGAT 60
consensus_7598#1 ---CCTCCACCTCGATCGATCCATCGCACACTAACTAA-----CAGAGCTAAGATACGAC 52
* * *** * * * *** * * * * ** **** * * **
consensus_7598#0 TCAGGCCATCTGACCTGATACAATAATGGCATCCTC--CATCTTGCTCCTGGTGGTGCTT 118
consensus_7598#1 GATGATGA--TGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGG----- 105
* * *** * ** * * ** **** * * ******** ***
consensus_7598#0 GCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGAC 178
consensus_7598#1 -CCGTGATCCT--CTCCGCCGGCGC----------CGCCGACCCGGACATCCTCACCGAC 152
* ** * **** ***** ** ****** ******** ** ***
consensus_7598#0 TACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACC 238
consensus_7598#1 TTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAG 212
* **** * ** ** ** * ** * *** ***** ********* * **
consensus_7598#0 GGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACG 298
consensus_7598#1 AACCTC-GTCACCGGC--------AACTCCGGCGACCCG---------GCCAAGCTCACC 254
* ** * *** ** *** ** *** ***** ****
consensus_7598#0 GTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCC 358
consensus_7598#1 GTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCC 314
** *********** ***************** ****** *** *********
consensus_7598#0 GTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAG 418
consensus_7598#1 GCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAG 374
* **** * * * * * **** *************** ****** * * * ***
consensus_7598#0 CTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAA--GC 476
consensus_7598#1 CTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGC 434
** *** * **** * *** **** ** ** ******** * ** *** **
consensus_7598#0 TC----TACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTG 532
consensus_7598#1 ACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTG 494
* ***** *** ** **************** *********** ******
consensus_7598#0 CACTTCCAGTTCAACTCCGGGAACCA-GCCGGCCATGGCGC--TCTCGGCGTTCGGAAGC 589
consensus_7598#1 CACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGC 554
*************** ** * * * * ** * **** **** ** ***** ***
consensus_7598#0 GCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCC 649
consensus_7598#1 GCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACC 614
*** ** * ** * * ** * ** * * * * ******* ********** **
consensus_7598#0 GTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTA 709
consensus_7598#1 ATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAG 674
* **** ****** * * ****** * * ** ** * ******** ** **
consensus_7598#0 ACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCC 769
consensus_7598#1 GCGCCGCCT----TCGCCGAGGCCCTCGCCGG-GGTCCTCCTCCTCCGCCGCCGCGGCTT 729
* ** ** *** * ****** *** *** * * * *
consensus_7598#0 TGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTAC-CAACTACTGAAGAAGGTA 828
consensus_7598#1 TGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTT 789
****** * ** * ** * ** * *** * ** * * * * *
consensus_7598#0 AATT---ATGATTTGTGTGGTGAA--TAATTCTGAA--TTGTGGTTGTATTGTCTAGTCT 881
consensus_7598#1 ACTTCTAGTGAGTTGTG-AGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCA 848
* ** *** ***** * *** * * *** * * *** *** *** * **
consensus_7598#0 GAAGAGCTTTGA-ACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATA 940
consensus_7598#1 TCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTT 908
* * * * * *** * **** * ** ** *** * ** * ** *
consensus_7598#0 GACCAGTTCAGTTGTAA---GTGTTGAGAGTT--TCTCTGCTGTAACGGCTTTCCACAAT 995
consensus_7598#1 TGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATAT 968
** * ** ** * * * ** * ********* * * * ** **
consensus_7598#0 AATGATACAT---CTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA 1039
consensus_7598#1 TGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT-------- 1007
* ** * **** * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||