These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1305 fasta sequence [ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCACCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGTAGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAACCCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCCAGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCTGCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGCACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT] [-] EMBL AK070100 [ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCACCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGTAGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAACCCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTAGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCA ] [+] EMBL AK069704 [ CCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCCTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACCACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTGAGGTCCGCGAGGTTGGGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACGTAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCGGACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGAAGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGCGAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCCAGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCTGCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGCACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT] [+] EMBL CB639674 [ CCATCTCCATTCTCCACGGCCACGGCCGAGCGGTGGTTGCTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGGCGCCGCGAAGCTCTTCCACGCCTTGCCGCGTG ] consensusID : consensus_7601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [AACTCGTCAAGTCTTCTTCAACCCGTCGACTGGAAAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCACTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACAACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGCGGCCGGGTCGAACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAGTCCGCGAGGTGGGCTCCGTAGGCCAAGCTATTCCCTTAGTAGGTATTAG] [-] EMBL BU673608 [AACTCGTCAAGTCTTCTTCAACCCGTCGACTGGAAAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCCACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCGATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTTCTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCTGCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTCCTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTGGTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCGGCGGAGGCTCCTTCCCCGCCGCCGCGAAGCTCTCCCACGCCTTGCCGCGTGGGGCCCCTCCCACTCCGCGGCACGGGCTTCGGGAACGGCACCTCCCGCACAACGCGGACGAAGCCAGCGAGCTCCGAGAGCGCGCCGGAGCGGAGGACGGGCGGCCGGGTCGAACGCGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAGTCCGCGAGGTGGGCTCCGTAGGCCAAGCTATTCCCTTAGTAGGTATTAG] consensusID : consensus_7601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GCTGGCACAGTGCTTACGGCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGGGCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGACGAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACGCGCCGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTAAGGTCCGCGAGGTT] [-] EMBL CB965981 [GCTGGCACAGTGCTTACGGCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGGGCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGACGAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACGCGCCGGGAACCCGCCGAGCGCGTGGTCCTCGAGCGCGAGGGTAAGGTCCGCGAGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7601#0 ACAAACTAAAGCCAAAATTTGTGATAAACTGTGGCAACTCAATTACAACTTGTACAATCA 60 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 CCCACACACTTGACCTTTTCGGCCAGTTCAGCCACGACGGCAGGTGGCTCGTGGGCTAGT 120 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 AGCCTATAGGCGCCACGTGTGGCCCAGGCAGAGCCCAAAACTCGTCAAGTCTTCTTCAAC 180 consensus_7601#1 --------------------------------------AACTCGTCAAGTCTTCTTCAAC 22 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 CCCTCGACTGGACAGGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCC 240 consensus_7601#1 CCGTCGACTGGA-AAGGGTCACCGGGCAACGCCGCGGCGTGTCGTCCATCTCCATTCTCC 81 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 ACGGCCACGGCCGAGCGGTGGTTG-CTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCG 299 consensus_7601#1 ACGGCCACGGCCGAGCGGGTGTTGACTCGCCGCCCGCACTATTGCCGCGGATTTTTCTCG 141 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 ATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTT 359 consensus_7601#1 ATTCTCCGCGAACCGTTCGAAGCCACCGCCTCACTGCTGGTCCAATCCCACCCGCCGCTT 201 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 CTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCT 419 consensus_7601#1 CTTCCTCTCCGCCCGCACGCGGAAGCTCACTTTCCCCCTCTTCTCCGGTACTACTCCCCT 261 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 GCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTC 479 consensus_7601#1 GCGCTCCCCGCCGCCATCAACGCTCGGCTTCAATACCACCGCTTCTTCTGCATTCGCCTC 321 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 CTCCTCGTGGCGAACG-CGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTG 538 consensus_7601#1 CTCCTCGTGGCGAACGGCGCGCCTCCCACCTCGCCGTCGCCTCGTCGTACGCCGCCTTTG 381 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 GTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCG 598 consensus_7601#1 GTTCGGGCTCCGGCTCCGGCTTGTCGGGAAAGCGCGGGAGCCACCGCGGCACGTGCTTCG 441 consensus_7601#2 ---------------------------------------GCTGGCACAGTGC---TTACG 18 ** * * * * * ** consensus_7601#0 GCGGAGGCTCCTTCCCC--GCCGC-CGCGAAGCTCTC-CCACGCC--TTGCCG-CGTGGG 651 consensus_7601#1 GCGGAGGCTCCTTCCCC--GCCGC-CGCGAAGCTCTC-CCACGCC--TTGCCG-CGTGGG 494 consensus_7601#2 GCGGAGGCTCCGTTCCCACGCCGCACGCGAAGCTCTCACCACAGCCATTGCCGTCGTGGG 78 *********** * *** ***** ************ **** * ****** ****** consensus_7601#0 GCCCCTCCC-CTCCGCGGCACGGGCTTC-GGGAACGGCACCTCCC-GCACCACGC-GGAC 707 consensus_7601#1 GCCCCTCCCACTCCGCGGCACGGGCTTC-GGGAACGGCACCTCCC-GCACAACGC-GGAC 551 consensus_7601#2 GCCCCTCCACCTCCGCGGCACGGGCTTCAGGGAACGGCACCTCCCAGCACCACGCAGGAC 138 ******** ****************** **************** **** **** **** consensus_7601#0 GAAGCCAGCGAGCTCCGAGAGCGC-GCCGGAGCGGAGGACGGGGCGGGCGGGGTCGGACG 766 consensus_7601#1 GAAGCCAGCGAGCTCCGAGAGCGC-GCCGGAGCGGAGGACGGGC--GGCCGGGTCGAACG 608 consensus_7601#2 GAAGCCAGCGAGCTCCGAGAGCGCAGCCGGAGCGGAGGACAGGGGCGGGCGGGGTCGACG 198 ************************ *************** ** ** *** *** consensus_7601#0 CGCCGGGGAACCCGCCGAGCGCGTGGTCCTC-GAGCGCGAGGGTGAGGTCCGCGAGGTTG 825 consensus_7601#1 CGCCGGGGAACCCGCCGAGCGCGTGGTCCTCAGAGCGCAAGGGTGAG-TCCGCGAGGT-G 666 consensus_7601#2 CGCCGGG-AACCCGCCGAGCGCGTGGTCCTC-GAGCGCGAGGGTAAGGTCCGCGAGGTT- 255 ******* *********************** ****** ***** ** ********** consensus_7601#0 GGCTCCGTGCGGCCGCGGGCCTCGGCGATGGCCGAGGCCGCGCGGCCCAGGGAGGCAACG 885 consensus_7601#1 GGCTCCGTA-GGCCA--AGCTATTCCCTTAGTAGGTATTAG------------------- 704 consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 TAGCGCCCGGCGATGTCGGAGAGGGCGCGGAGGGCGGCTGGCTCCGCCGCGGTGTAGCCG 945 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 GACGAGTGGAGGATCTGGGCGGTGGAGACTCTGCTAACCGCGTCCTGGAGGATGCAGGGA 1005 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 AGGTGTCCGGCCGCCTCACGGGGGGCCCTCGCCGGAGTTCCCATACATGGCGGCGACGGC 1065 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 GAGGATCTTCAAAAACCCTAGAGGTCAGATCGTTCCAACCGGTGGTTTTATGCCATGTCC 1125 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 AGTTTATGTCTTTTTTTTTTTTTTGAGGGAATGTCCAGTTTATGTTTTATTTATTTTTCT 1185 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 GCTGCACTTTTGGTTTTTTTTAAATGGAAAGTATTGATGGGTATTGGGCCGGCCATCTGC 1245 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ consensus_7601#0 ACTCGAGGCCCATGAGTCCACCAGTTGTCGTCTTAACCCTTTTAATAATGAGTAGTAGTT 1305 consensus_7601#1 ------------------------------------------------------------ consensus_7601#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||