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Oryza sativa
cluster # 7604 cluster # 7604       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7604#0 length = 1043 sequences # 5  

consensusID : consensus_7604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1043
fasta sequence
                              [CAGCAGTCCTCACCACCCTACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCGCTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCCTCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGATGTCGAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGCCGCAACGACCTGAAGCGGGAGGCTCGTCGCGCCGTGCAGTGGGGTATGGACCTCGCTAAGTTCTCCCCTCTCCAGATCAAGCGCATCCTCAGGGCTGCGTCGCTAGATCGCGAGGTGTTCGACGCTCTCATGCTCGTGAAGAGATTTGGATCAGATGTGCGGGAAGGAAAAAGGAGGCAGTTCAACTATATCGGAAGACTTCTGCGTGGTGCACAACCCGAATTGATGGACACTCTAATCCAGTATTCGAAGGATGGCGATGATAACAGGTTACTTGCATTAATGAGTGAAAATACATTCTTGATGGAAGATGAGGAAATAGAGGACTTGCCTTGCAATGAAGAAGAGGGTGACAAAGAGCATATTGAAATTGCAGATAGATGGTTTGAGGGCCTCCTTTCCAAAGACATTTCAGTTACTAATGAAATTTATGCGATACATAATGTTGAGTTTGATCGTCAGGAACTGCGGAAGCTCGTGAGGACAGTCCACATGGTCCAAGATAATATAGAAAATGAACATGAAGAGGAATCTACCATGAAGCTTTTGGGAGCAAAGAAACAACTTTTGTGCTTCCTTCGCTCCATTGCTAAGGAGGCATACGTCAAATCATAGATTTACTCACTTCTCTTCTAGATGGTTCTAAAATGCTTTGTTATTCAGTTGTAGAAATATTGGCCCAAATGGCCCTGCTTTTTTTTAGACTCATGTACTTTATTTAAAGTAAGGGCGCACTGTGTATGTCAGAGGGGAAGTTAACATGAAGAATTACCATATTGCAGAAAAGCACCTAAGAAATGGGC]

[+] EMBL CF330905             [CAGCAGTCCTCACCACCCTACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCGCTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCCTCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGATGTCGAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGCCGCAACGACCTGAAGCGGGAGGCTCGTCGCGCCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF312680             [tAGCAGTCCTCACC     ACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCGCTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCCTCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGATGTCGAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGCCGCAACGACCTGAAACGGGAGGCTCGTCGCGCCGTGCAGTGGGGTATGGACCTCGCTAAGTTCTCCCCTCCCCAGATCAAGCGCATCCTCAGGGCTGCGTCGCTAGATCGCGAGGTGTTCGACGCTCTCATGCTCGTGAAGAGATTTGGATCAGATGTGCGGGAAGGAAAAAGGAGGCAGTTCAACTATATCGGAAGACTTCTGCGTGGTGCACAACCCGAATTGATGGACACTCTAATCCAGTATTCGAAGGATGGCGATGATAACAGGTTACTTGCATTAATGAGTGAAAATACATTCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK066975             [         TCACCACCCTACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCGCTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCCTCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGATGTCGAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGCCGCAACGACCTGAAGCGGGAGGCTCGTCGCGCCGTGCAGTGGGGTATGGACCTCGCTAAGTTCTCCCCTCTCCAGATCAAGCGCATCCTCAGGGCTGCGTCGCTAGATCGCGAGGTGTTCGACGCTCTCATGCTCGTGAAGAGATTTGGATCAGATGTGCGGGAAGGAAAAAGGAGGCAGTTCAACTATATCGGAAGACTTCTGCGTGGTGCACAACCCGAATTGATGGACACTCTAATCCAGTATTCGAAGGATGGCGATGATAACAGGTTACTTGCATTAATGAGTGAAAATACATTCTTGATGGAAGATGAGGAAATAGAGGACTTGCCTTGCAATGAAGAAGAGGGTGACAAAGAGCATATTGAAATTGCAGATAGATGGTTTGAGGGCCTCCTTTCCAAAGACATTTCAGTTACTAATGAAATTTATGCGATACATAATGTTGAGTTTGATCGTCAGGAACTGCGGAAGCTCGTGAGGACAGTCCACATGGTCCAAGATAATATAGAAAATGAACATGAAGAGGAATCTACCATGAAGCTTTTGGGAGCAAAGAAACAACTTTTGTGCTTCCTTCGCTCCATTGCTAAGGAGGCATACGTCAAATCATAGATTTACTCACTTCTCTTCTAGATGGTTCTAAAATGCTTTGTTATTCAGTTGTAGAAATATTGGCCCAAATGGCCCTGCTTTTTTTTAGACTCATGTACTTTATTTAAAGTAAGGGCGCACTGTGTATGTCAGAGGGGAAGTTAACATGAAGAATTACCATATTGCAGAAAAGCACCTAAGAAATGGGC]
[+] EMBL CF300378             [             CACCCTACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCGCTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCCTCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGATGTCTAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGCCGCAACGACCTGAAGCGGGAGGCTCGTCGCGCCGTGCAGTGGGGTATGGACCTCGCTAAGTTCTCCCCTCTCCAGATCAAGCGCATCCTCAGGGCTGCGTCGCTAGATCGCGAGGTGTTCGACGCTCTCATGCTCGTGAAGAGATTTGGATCAGATGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF312681             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGGAAATAGAGGACTTGCCTTGCAATGAAGAAGAGGGTGACAAAGAGCATATTGAAATTGCAGATAGATGGTTTGAGGGCCTCCTTTCCAAAGACATTTCAGTTACTAATGAAATTTATGCGATACATAATGTTGAGTTTGATCGTCAGGAACTGCGGAAGCTCGTGAGGACAGTCCACATGGTCCAAGATAATATAGAAAATGAACATGAAGAGGAATCTACCATGAAGCTTTTGGGAGCAAAGAAACAACTTTTGTGCTTCCTTCGCTCCATTGCTAAGGAGGCATACGTCAAATCATAGATTTACTCACTTCTCTTCTAGATGGTTCTAAAATGCTTTGTTATTCAGTTGTAGAAATATTGGCCCAAATGGCCCTGCTTTTTTTTAGACTCATGTACTTTATTTAAAGTAAGGGCGCACTGTGTATGTCAGAGGGAAAGTTAACATGAAGAATTACCATATTGCAGAAAAaaaaaaaaa        ]


>consensus_7604#0 CAGCAGTCCTCACCACCCTACCCTATGGCGTCCGCCGCCGTTGCCGCCGCGGCCGCGCCG CTGCGGCGTTCGCTCCTTCCCTCCCTCAACCCGAGCTGTCTCTTCTCCTCCCTCGCGTCC TCCTCGCACCGCCTATCTCTACCGCGCGCCCTCCGCCCCGCGGGCCCTTTGCCCTCCGAT GTCGAAGACTCGGACGATTCGAATGCCGGAGACGGCGCCGGCGAGGCCCTCAGGAAGAGC CGCAACGACCTGAAGCGGGAGGCTCGTCGCGCCGTGCAGTGGGGTATGGACCTCGCTAAG TTCTCCCCTCTCCAGATCAAGCGCATCCTCAGGGCTGCGTCGCTAGATCGCGAGGTGTTC GACGCTCTCATGCTCGTGAAGAGATTTGGATCAGATGTGCGGGAAGGAAAAAGGAGGCAG TTCAACTATATCGGAAGACTTCTGCGTGGTGCACAACCCGAATTGATGGACACTCTAATC CAGTATTCGAAGGATGGCGATGATAACAGGTTACTTGCATTAATGAGTGAAAATACATTC TTGATGGAAGATGAGGAAATAGAGGACTTGCCTTGCAATGAAGAAGAGGGTGACAAAGAG CATATTGAAATTGCAGATAGATGGTTTGAGGGCCTCCTTTCCAAAGACATTTCAGTTACT AATGAAATTTATGCGATACATAATGTTGAGTTTGATCGTCAGGAACTGCGGAAGCTCGTG AGGACAGTCCACATGGTCCAAGATAATATAGAAAATGAACATGAAGAGGAATCTACCATG AAGCTTTTGGGAGCAAAGAAACAACTTTTGTGCTTCCTTCGCTCCATTGCTAAGGAGGCA TACGTCAAATCATAGATTTACTCACTTCTCTTCTAGATGGTTCTAAAATGCTTTGTTATT CAGTTGTAGAAATATTGGCCCAAATGGCCCTGCTTTTTTTTAGACTCATGTACTTTATTT AAAGTAAGGGCGCACTGTGTATGTCAGAGGGGAAGTTAACATGAAGAATTACCATATTGC AGAAAAGCACCTAAGAAATGGGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)