These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1570 fasta sequence [CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGCATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAGCCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCCGATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGACTTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAGGCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATCCAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAGAGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAATTCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATG] [+] EMBL AK068002 [CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGCATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAGCCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCCGATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGACTTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAGGCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATCCAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAGAGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAATTCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATG] [+] EMBL CF329251 [CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGCTAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGATAGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGGTGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAACGACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCACATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATCCCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAG ] consensusID : consensus_7642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 663 fasta sequence [CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAA-GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG-CCGTCGACGATCCGGGCCGTNTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCA-GCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAAAAAAAAAAGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC] [-] EMBL CF329252 [CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAA GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCCGTCGACNGTCCGGGCCGTTTCCAATGTCCTCAAGGGCAAGACGTCCTATTCA GCAACTCAGATTTGAGACCGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAAAAAAAAAA ] [+] EMBL OSC20251 [ AGCGACAA GGTGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG CCGTCGACGATCCGGGCCGTNTCCAAGGTCCTCAAGGGCAAGACGTCCTATTCAGGCAACTCAGATT ] [-] EMBL CA759444 [ cgaGACAAGGGGGACCATCGTGGGTGTCAACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAGAAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGGCTGCCGGCACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCGCGAGCTTAGTCGGCGGATGCTGCCGGACGACG CCGTCGACGATCCGGGCCGTCTCCAAGGTCCTCAAGGGCAAGACGGCCTATTCA GCAACTCAGATTTGAGACTGACTACTTGGTAGTGCAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGCAGCGGACATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGAGCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGTAATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGCACTGATAATGCAAAAGAACAAGTTGCGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7642#0 CCCTCGTGGCCTCAGCTCGTCGATCGATCGATCTCTTAGTCCGATCTACTTGCGCGCGGC 60 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 TAGCTGCTGCTGCTGCTGCGTGTTGGGGGTGGTGGTGCGAGGAGTGATTGGTTGGTTGAT 120 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 AGATTGATCGATCGAGCGATGGCCGTGGCGGTGGAGGAGATCGTCAGGAGGGCCGGCGGG 180 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 TGCGCCGTGATCGACGGCGGATTCGCCACGCAGCTGGAGGCGCTCGGCGCCGACATCAAC 240 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 GACCCGCTCTGGAGCGCCGCCTGCCTCATCACCAAGCCGCACCTCATCAAGGAGGTTCAC 300 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 ATGCAATATCTTGAAGCAGGTGCCGATGTCATCATTTCCTCATCATACCAGGCAACTATC 360 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 CCAGGATTCTTAGCCAGAGGAATGCTTCTTGAGGAGGCAGAAGGGTTACTGCGAAGGAGC 420 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 ATTGAATTGGCACTGGAAGCACGAGATGAATTCTGGAAGTCGACGCTGAGGAAGTCCAAG 480 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 CCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCC 540 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 GATGGCTCAGAGTACAGTGGATCGTATGGAGAAGACATCACGGCAGAGAAACTGAAGGAC 600 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 TTCCACAGGCGCCGGCTGCAGGTTCTTGCGAGCGCTGGCCCTGACTTGATCGCGTTTGAG 660 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 GCCATCCCGAACAAAATGGAGGCACAGGCTTTAGTTGAGCTTCTGGAGGAAGAGAACATC 720 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 CAGGTCCCCTCCTGGATCTGCTTCAGCTCAGTGGACGGCAAGAACCTGTGCTCAGGAGAG 780 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 AGCTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTC 840 consensus_7642#1 --CTTTGCAGAGTGCCTCCAATTCCTCAACGCCAGCGACAAGGTGACCATCGTGGGTGTC 58 ********************************************************** consensus_7642#0 AACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAG 900 consensus_7642#1 AACTGCACGCCGCCTCAGTTCATCGAGGGCATCATACGCGAGCTCAAGAAGCAAACCAAG 118 ************************************************************ consensus_7642#0 AAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGG 960 consensus_7642#1 AAGGCGATCGCGGTGTACCCGAACAGCGGCGAGATTTGGGACGGCAGAGCGAAGAGATGG 178 ************************************************************ consensus_7642#0 CTGGTGAGCACGACCTGTTACACTTAATCTGTTCTCATCACTGGCACGCCAAGAAAGATT 1020 consensus_7642#1 CTG--------------------------------------------------------- 181 *** consensus_7642#0 AGCACAGATCTGTTCTCATCACTGGCACGCCAAGAAAGATTAGCACATTTCCGTGCGAAT 1080 consensus_7642#1 ------------------------------------------------------------ consensus_7642#0 TCTTGGTCGTCTTGATCATCAAACTGACTGGTTTTTTTGATGCGTCGCATGCACAGCCGG 1140 consensus_7642#1 --------------------------------------------------------CCGG 185 **** consensus_7642#0 CACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCG 1200 consensus_7642#1 CACAGTGCTTTGGGCACAAGAGCTTCGACGCGCTCGCGAAGAGGTGGCAGGAGGCCGGCG 245 ************************************************************ consensus_7642#0 CGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTCTCCAAGG 1260 consensus_7642#1 CGAGCTTAGTCGGCGGATGCTGCCGGACGACGCCGTCGACGATCCGGGCCGTNTCCAAGG 305 **************************************************** ******* consensus_7642#0 TCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTG 1320 consensus_7642#1 TCCTCAAGGGCAAGACGTCCTATTCAGCAACTCAGATTTGAGACCGACTACTTGGTAGTG 365 ************************************************************ consensus_7642#0 CAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGC 1380 consensus_7642#1 CAACTTTTAATTAATAGCGAGAATTATACCGATTCAGTATTAGTTTATGCTAAATTTTGC 425 ************************************************************ consensus_7642#0 AGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGA 1440 consensus_7642#1 AGCGGAAATTACCGTCTAACGATTTGTAATGCTGATGTGCAACCATCGAATTTTATACGA 485 ************************************************************ consensus_7642#0 GCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGT 1500 consensus_7642#1 GCATTAGCATGGAGAGTGTTGCAGAGGCCTGGGGATGTGATTTATCTTCTTTATCCTTGT 545 ************************************************************ consensus_7642#0 AATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGC 1560 consensus_7642#1 AATATAAGGAAAGTAGCAGCCATGTATCGAATTTATGAGTTATCTATATATCCAAATTGC 605 ************************************************************ consensus_7642#0 ACTGATAATG------------------------------------------------ 1570 consensus_7642#1 ACTGATAATGCAAAAGAAAAAAAAAAGTGTCCAAAAAAAAAAAAAAAAAAAAAGCGGC 663 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||