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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1267 fasta sequence
[TTTTCCTCACTCCCTTGACCCGTCGTCCCATGCTAAAGCCAAAGCTTAGGCAGCAGCAGTAGGCTTAAGCTTGGTTGGTCAAGGGCGAGTGGCCATGGAGGCCATGGACGTCAAGTACAAGCCGCTCGTGTTCCCCAACGGCGCCATCAAGAAGGCGGCGAAGCCGGCGGCGGTGGCGCCTGCGGTGGGCGGCGGCGGAGGGGGAGAGACGGTGTACCGGGAGTGCCTCAAGAACCACGCGGCGAGCCTGGGCGGGCACGCGCTGGACGGGTGCGGGGAGTTCATGCCGTCGCCGGCGGCGAACCCCGCCGACCCGACGTCGCTCAGGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCACATGCTGCTGTCGCTGGGGTCGAGCGGGCAGGCGCAGAGGCTCCCGCCGCAGGTGATGTCGCCGGCGGCGGCGGCCGCGCCTCCCCCCGGCGGCGGGCGGCGGCGGGATGCCGAGGAAGCGGTTCCGCACCAAGTTCACCGCCGAGCAGAAGCAGCGGATGCAGGAGCTCTCGGAGCGGCTCGGGTGGCGCCTCCAGAAGCGCGACGAGGCCATCGTCGACGAGTGGTGCCGCGACATCGGCGTCGGCAAGGGCGTCTTCAAGGTCTGGATGCACAACAACAAGCACAACTACCTCGGCGGCCACAGCGCCCGCCGCAGCGCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCCCGCCATTCAACCCTCCCACCTCACCTCCTCCTCCTCCTCCTCCTCCTCCACACGCCACCGACTTCAACATCAACGGAACAGCCACCGCCGCCACCGCCGCCGCCGCCGCCACCATCGCCGCCGGCAACCACCAAGAGAACGGAGCATCGTCGCCGCAATCAGCATAAAAACTAGAGAGAAAAAGAGACAGCAAGTAGCCTTCAGTGATCATTCCATTTTCCTTTTTTTTTGCTTCTTAGATCGCTCATCCAAGAAATTAACCCCAAGAAAGGACGCCGCGGCTGCAGATCAGTTCTTGATGCCTAGTTACAGCAAAAGAAAAAAAAAGAGGAGAAAGAAGTCCAATCTTTCCTTATCCCTGTATGTTCTTGGGATCCGATGATGATGGAGAATTAGGGATTTTAATTAGATTATCTCATCTCAAAAGTGGCACCTCTCTTGGCTGTTCTTGTCCTCCCTTTGAAGCAGAGGTAGGAGGAGAGGGTTCTTCCTTCTAGAATTCTAGGATCTCTCTTCTCTTTGAGAAAAAATGTATACAAAAATGG]
[+] EMBL AK069500 [TTTTCCTCACTCCCTTGACCCGTCGTCCCATGCTAAAGCCAAAGCTTAGGCAGCAGCAGTAGGCTTAAGCTTGGTTGGTCAAGGGCGAGTGGCCATGGAGGCCATGGACGTCAAGTACAAGCCGCTCGTGTTCCCCAACGGCGCCATCAAGAAGGCGGCGAAGCCGGCGGCGGTGGCGCCTGCGGTGGGCGGCGGCGGAGGGGGAGAGACGGTGTACCGGGAGTGCCTCAAGAACCACGCGGCGAGCCTGGGCGGGCACGCGCTGGACGGGTGCGGGGAGTTCATGCCGTCGCCGGCGGCGAACCCCGCCGACCCGACGTCGCTCAGGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCACATGCTGCTGTCGCTGGGGTCGAGCGGGCAGGCGCAGAGGCTCCCGCCGCAGGTGATGTCGCCGGCGGCGGCGGCCGCGCCTCCCCCCGGCGGCGGGCGGCGGCGGGATGCCGAGGAAGCGGTTCCGCACCAAGTTCACCGCCGAGCAGAAGCAGCGGATGCAGGAGCTCTCGGAGCGGCTCGGGTGGCGCCTCCAGAAGCGCGACGAGGCCATCGTCGACGAGTGGTGCCGCGACATCGGCGTCGGCAAGGGCGTCTTCAAGGTCTGGATGCACAACAACAAGCACAACTACCTCGGCGGCCACAGCGCCCGCCGCAGCGCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCCCGCCATTCAACCCTCCCACCTCACCTCCTCCTCCTCCTCCTCCTCCTCCACACGCCACCGACTTCAACATCAACGGAACAGCCACCGCCGCCACCGCCGCCGCCGCCGCCACCATCGCCGCCGGCAACCACCAAGAGAACGGAGCATCGTCGCCGCAATCAGCATAAAAACTAGAGAGAAAAAGAGACAGCAAGTAGCCTTCAGTGATCATTCCATTTTCCTTTTTTTTTGCTTCTTAGATCGCTCATCCAAGAAATTAACCCCAAGAAAGGACGCCGCGGCTGCAGATCAGTTCTTGATGCCTAGTTACAGCAAAAGAAAAAAAAAGAGGAGAAAGAAGTCCAATCTTTCCTTATCCCTGTATGTTCTTGGGATCCGATGATGATGGAGAATTAGGGATTTTAATTAGATTATCTCATCTCAAAAGTGGCACCTCTCTTGGCTGTTCTTGTCCTCCCTTTGAAGCAGAGGTAGGAGGAGAGGGTTCTTCCTTCTAGAATTCTAGGATCTCTCTTCTCTTTGAGAAAAAATGTATACAAAAATGG]
[+] EMBL C26707 [ TAGGCTTAAGCTTGGTTGGTCAAGGGCGAGTGGCCATGGAGGCCATGGACGTCAAGTACAAGCCGCTCGTNTTCCCCAACGGCGCCATCAAGAAGGCGGCGAANGCG GACGGTGGCG ]
consensusID : consensus_7654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[AAAAATACAATTATAATTCGCTTATTCGTAAACGTGCCATTAAAATTTTACAGAAATTAGAACCGTGCCACTCTCGTCAAGTTTTCCATCTATCCCCCTCCTTTTCCGTCATCTCCGTCACAGCGCTCAGCGCCGCCGCCACCTCGGTCAGCAGCCGCACCTCCGCCGTACGTCAGCCTCGGGATGCCGCGCCGAGCAATGCTCGGCTTGCTACGCCACTCCTCGCCGGGCACCGCAAGGTCGTGCCGCCGCCCGACCTCGCCGCGCCACTGTCGCCCAGCTTCGTCCGCGTCGTCGCCGGAGACATGGCTGAGGTGGAGCTTGTGGGCTGTACCCCTCCGTAGCTACAGCTGCGACGAGCACAGCCGGCGGTGGGCGGAGGAGAGACGGTGTACCAGGAGTGCCCCAAGAACCACGCAGCGAGCCTGGGCGGACACGGCGCTGGACGGCTGCGAGGAGTTCATGCCGTCGTCGGCGGTGAACCCACCGACCCGACGTCGCTCATGTGCGCCGCGTGCGGCTGCCACTGCAACTTCCACTGCTGGCTGCTGGAGGGGTCCCCGCCGCCGCCTCCGCCGCTGGCGCTGCCCGCGCCGCCCATGCCGGCGAACGTGCTCCACGGCCAGCTGCACCGCGAGGAGGAGACGCCCGAGGTCCGGCTCCCTGGGGTTGATGGCGACGAGTCTGACAACAACTCGGATGGCTCGGAATACTACGACGAGCGGTCTGTGTCCCCGCCGTCGCCACCGCACCTGCCGGCGCCGGTGGTGCACCAGCCGTATTACCCTTCGGCGCAGCACATGCTACTCTCGCTGGGCTCGAGCGGGCAGGCGCAAAGGCTCCCGCTGTAGGTGATGTCGCCGGCGGCGACCGCGCCTCCCTCCGGCGGCGCCGGGATGCCGAGGAAGCGGTTCCGCACCAAGTTCACAGCCGAGCAGAAGCAGT]
[-] EMBL AK061222 [AAAAATACAATTATAATTCGCTTATTCGTAAACGTGCCATTAAAATTTTACAGAAATTAGAACCGTGCCACTCTCGTCAAGTTTTCCATCTATCCCCCTCCTTTTCCGTCATCTCCGTCACAGCGCTCAGCGCCGCCGCCACCTCGGTCAGCAGCCGCACCTCCGCCGTACGTCAGCCTCGGGATGCCGCGCCGAGCAATGCTCGGCTTGCTACGCCACTCCTCGCCGGGCACCGCAAGGTCGTGCCGCCGCCCGACCTCGCCGCGCCACTGTCGCCCAGCTTCGTCCGCGTCGTCGCCGGAGACATGGCTGAGGTGGAGCTTGTGGGCTGTACCCCTCCGTAGCTACAGCTGCGACGAGCACAGCCGGCGGTGGGCGGAGGAGAGACGGTGTACCAGGAGTGCCCCAAGAACCACGCAGCGAGCCTGGGCGGACACGGCGCTGGACGGCTGCGAGGAGTTCATGCCGTCGTCGGCGGTGAACCCACCGACCCGACGTCGCTCATGTGCGCCGCGTGCGGCTGCCACTGCAACTTCCACTGCTGGCTGCTGGAGGGGTCCCCGCCGCCGCCTCCGCCGCTGGCGCTGCCCGCGCCGCCCATGCCGGCGAACGTGCTCCACGGCCAGCTGCACCGCGAGGAGGAGACGCCCGAGGTCCGGCTCCCTGGGGTTGATGGCGACGAGTCTGACAACAACTCGGATGGCTCGGAATACTACGACGAGCGGTCTGTGTCCCCGCCGTCGCCACCGCACCTGCCGGCGCCGGTGGTGCACCAGCCGTATTACCCTTCGGCGCAGCACATGCTACTCTCGCTGGGCTCGAGCGGGCAGGCGCAAAGGCTCCCGCTGTAGGTGATGTCGCCGGCGGCGACCGCGCCTCCCTCCGGCGGCGCCGGGATGCCGAGGAAGCGGTTCCGCACCAAGTTCACAGCCGAGCAGAAGCAGT]
consensusID : consensus_7654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[TTGTTCTTGTCCTCCCTTCGAAGCANAAGTANGGANGANAGGGTTCTTCCTTCTAAAATTCTANGATCTCTCTTCTCTTTGAAGAAAAAATGTATACAAAAATGGAAGCAGCCTCACCTCTTGCACTCTGCTCACTTAATTAGTGTTATTATTATTATTATTATTATTTTTACTACTGTCTTTCATTAATCAATTGACTTGCTTGT]
[+] EMBL BE228566 [TTGTTCTTGTCCTCCCTTCGAAGCANAAGTANGGANGANAGGGTTCTTCCTTCTAAAATTCTANGATCTCTCTTCTCTTTGAAGAAAAAATGTATACAAAAATGGAAGCAGCCTCACCTCTTGCACTCTGCTCACTTAATTAGTGTTATTATTATTATTATTATTATTTTTACTACTGTCTTTCATTAATCAATTGACTTGCTTGT]
consensusID : consensus_7654#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence
[TACCGGGAGTTCCTTAAGAACCACGCGGCGAGCCTGGGCGGGCACGCGCTGGACGGGTGCNGGGAGTTCATGCCGTCGCCGGCGGNAAACNCCGCCGACCCGACGTCGCTCAGGTGCGCTGCGTGCTGTTGCCAACCGCAACTTCCAACTGCCGGCTGCTNGANGGGTCCCCCCCGCCGCCGCNGCCGCCGGGCTT]
[+] EMBL C91779 [TACCGGGAGTTCCTTAAGAACCACGCGGCGAGCCTGGGCGGGCACGCGCTGGACGGGTGCNGGGAGTTCATGCCGTCGCCGGCGGNAAACNCCGCCGACCCGACGTCGCTCAGGTGCGCTGCGTGCTGTTGCCAACCGCAACTTCCAACTGCCGGCTGCTNGANGGGTCCCCCCCGCCGCCGCNGCCGCCGGGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7654#1 ------------------------------------------------------AAAAAT 6
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 TTTTCCTCACTCCCTTGACCCGTCGTCCCATGCTAAAGCCAAAGCTTAGGCAGCAGCAGT 60
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 ACAATTATAATTCGCTTATTCGTAAACGTGCCATTA-AAATTTTACAGAAATTAGAACCG 65
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 AGGCTTA-AGCTTGGTTGGTCAAGGGCGAGTGGCCATGGAGGCCATGGACGTCAAGTACA 119
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 TGCCACTCTCGT----CAAGTTTTCCATCTATCCCCCTCCTTTTCCGTCATCTCCGTCAC 121
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 AGCCGCTCGTGTTCCCCAACGGCGCCATCAAGAAGGCGGCGAAGCCGGCGGCGGTGGCGC 179
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 A-GCGCTCAGCGCCGCCGCC-------ACCTCGGTCAGCAGCCGCACCTCCG---CCGTA 170
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CTGCGGTGGGCGGCGGCGGAGGGGGAGAGACGGTGTACCGGGAGTGCCTCAAGAACCACG 239
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 CGTC-AGCCTCGGGATGC-CGCGCCGAGCAATGCTCGGCTTGCTACGCCACTCCTCGCCG 228
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CGGCGAGCCTGGGCGGGCACGCGCTGGACGGGTGCGGGGAGTTCATGCCGTCGCCGGCGG 299
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 GGCACCGCAAGGTCGTGCCGCCGCCCGACCTCGCCGCG--CCACTGTCGCC-CAGCTTCG 285
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CGAACCCCGCCGACCCGACGTCGCTCAGGTGCGCCGCGTGCGGCTGCCACCGCAACTTCC 359
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 TCCGCGTCGTCGCCGGAGACATGGCTGAGGTGGAGCTTGTGGGCT----GTACCCCTCCG 341
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 ACCGC--CGCACATGCTGCTGTCGCTGGGGTCGAGCGGGCAGGCGCAGAGGCTCCCGCCG 417
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 TAGCTA-------CAGCTGCGACGAGCACAGC------CGGCGGTGGGCGGAGGAGAGAC 388
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CAGGTGATGTCGCCGGCGGCGGCGGCCGCGCCTCCCCCCGGCGGCGGGCGGCGGCGGGAT 477
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 GGTGTACCAGGAGTGCC---CCAAGA--ACCAC---------GCAGCGAGCCTGGGCGGA 434
consensus_7654#3 ----TACCGGGAGTTCC---TTAAGA--ACCAC---------GCGGCGAGCCTGGGCGGG 42
consensus_7654#0 GCCGAGGAAGCGGTTCCGCACCAAGTTCACCGCCGAGCAGAAGCAGCGGATGCAGGAGCT 537
consensus_7654#2 ---------------------------------------------------TTGTTCTTG 9
consensus_7654#1 CACGGCGCTGGACGGCTG------CGAGGAGTTC----ATGCCGTCGTCGGCGGTGAACC 484
consensus_7654#3 CACG-CGCTGGACGGGTG------CNGGGAGTTC----ATGCCGTCGCCGGCGGNAAACN 91
consensus_7654#0 CTCGGAGCGGCTCGGGTGGCGCCTCCAGAAGCGCGACGAGGCCATCGTCGACGAGTGGTG 597
consensus_7654#2 TCCTCCCTTCGAAGCANAAG----TANGGANG------ANAGGGTTCTTCCTTCTAAAAT 59
* * * * * *
consensus_7654#1 C-ACCGACCCGACGTCGCTCA---TGTGCGCCGCGTGCGGCTGC-------CA-CTGCAA 532
consensus_7654#3 CCGCCGACCCGACGTCGCTCA---GGTGCGCTGCGTGCTGTTGC-------CAACCGCAA 141
consensus_7654#0 CCGCGACATCGGCGTCGGCAAGGGCGTCTTCAAGGTCTGGATGCACAACAACAAGCACAA 657
consensus_7654#2 TCTANGATCTCTCTTCTCTTTGAAGAAAAAATGTATACAAAAATGGAA--GCAGCCTCAC 117
* ** * ** **
consensus_7654#1 CTTCC--A-CTGCT-----GGCTGCTGGAGGGGTCCC--CGCCGCCGCCTCCGCCGCTGG 582
consensus_7654#3 CTTCC--AACTGCC-----GGCTGCTNGANGGGTCCC--CCCCGCCGCCGCNGCCGCCGG 192
consensus_7654#0 CTACCTCGGCGGCCACAGCGCCCGCCGCAGCGCCTCCTCCTCCTCCGCCGCCGCCGCCGC 717
consensus_7654#2 CTCTTGCA-CTCT------GCTCACTTAATTAGTGTTATTATTATTATTATTATTATTTT 170
** * * * *
consensus_7654#1 CGCTGCCCGCGCCGCCCATGCCGGCGAACGTGCTCCACGGCCAGCTGCACCGCGAGGAGG 642
consensus_7654#3 GCTT-------------------------------------------------------- 196
consensus_7654#0 CGCCCCGCCATTCAACCCTCCCACCTCACCTCCTCCTCCTCCTCCTCCTCCTCCACACGC 777
consensus_7654#2 TACTACTGTCTTTCATTA-ATCAATTGACTTGCTTGT----------------------- 206
consensus_7654#1 AGACGCC--CGAGGTCCGGCTCCCTGGGGTTGATGGCGACGAGTCTGACAACAACTCGGA 700
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CACCGACTTCAACATCAACGGAACAGCCACCGCCGCCACCGCCGCCGCCGCCGCCACCAT 837
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 TGGCTCGGAATACTACGACGAGCGGTCTGTGTCCCCGCCGTCGCCACCGCACCTGCCGGC 760
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CGCCGCCGGCAACCACCAAGAGAACGGAGCATCGTCGCCGCAATCAGCATAAAAACTAGA 897
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 GCCGGTGGTGCACCAGCCGTATTACCCTTCGGCGCAGCACATGCTACTCTCGCTGGGCTC 820
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 GAGAAAAAGAGACAGCAAGTAGCCTTCAGTGAT-CATTCCATTTTCCTTTTTTTTTGCTT 956
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 ----GAGCGGGCAGGCGCAAAGGCTCCCGCTGTAGGTGATGTCGCCGGCGGCGACCGCGC 876
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CTTAGATCGCTCATCCAAGAAATTAACCCCAAGAAAGGACGCCGCGGCTGCAGATCAGTT 1016
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 CTCCCTCCGGCGGCGCCGGGATGCCGAGGAAGCGGTTCCGCACCAAGTTCACAGCCGAGC 936
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 CTTGATGCC-TAGTTACAGCAAAAGAAAAAAAAAGAGGAGAAAGAAGTCCAATCTTTCCT 1075
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 AGAAGCAGT--------------------------------------------------- 945
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 TATCCCTGTATGTTCTTGGGATCCGATGATGATGGAGAATTAGGGATTTTAATTAGATTA 1135
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 ------------------------------------------------------------
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 TCTCATCTCAAAAGTGGCACCTCTCTTGGCTGTTCTTGTCCTCCCTTTGAAGCAGAGGTA 1195
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 ------------------------------------------------------------
consensus_7654#3 ------------------------------------------------------------
consensus_7654#0 GGAGGAGAGGGTTCTTCCTTCTAGAATTCTAGGATCTCTCTTCTCTTTGAGAAAAAATGT 1255
consensus_7654#2 ------------------------------------------------------------
consensus_7654#1 ------------
consensus_7654#3 ------------
consensus_7654#0 ATACAAAAATGG 1267
consensus_7654#2 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||