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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 648 fasta sequence
[TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGTATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACAAAGTTTCTTGTGACTCCCAGCAACCTCTTCAATCTGCTATCACCTCCAGGATAACAAATTTGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGGTCAGAATTGCGATGAATCAGTTCGGTGGTGCCTGTGAGAGCCATTATTCTG]
[+] EMBL CF303476 [TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGTATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACAAAGTTTCTTGTGACTCCCAGCAACCTCTTCAATCTGCTATCACCTCCAGGATAACAAATTTGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGGTCAGAATTGCGATGAATCAGTTCGGTGGTGCCTGTGAGAGCCATTATTCTG]
[+] EMBL CF303851 [TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGTATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACAAAGTTTCTTGTGACTCCCAGCAACCTCTTCAA ]
[+] EMBL CF304720 [TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGTACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAATTAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTCATGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACATCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTCTCTCAACTGATACGCGGACATTGGAGGAGATACTTGG ]
[+] EMBL CF303317 [TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACTCGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACAGCAAGCTCATGTATTGGAACCGGTACACGGAACATCTGCACGGCTATTCTGAACCTGAAGCACACGGTCACGATGCCCTTGAATTAATTGATCATACT ]
consensusID : consensus_7672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[TGCATGCTTTTAAGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGGTCAGAATTGCNATGATCAGTTCGGTGGTGCCTGTAAGAGCCATTATTCTGAACATGATGCCAGAGAAGAGCAGACATCTAGTGAAGGAAGCACCCCAAGTGGGGATGTTCTTCATGGGGCCTTTGTTAGTGAAGACAATTACTCTGGGNAGTCAAGCAAAACAAACAGTGATGACTCAGGAGAAGGAAAACTGGGGCTTCACAAAATTTTTA]
[+] EMBL C28710 [TGCATGCTTTTAAGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGGTCAGAATTGCNATGATCAGTTCGGTGGTGCCTGTAAGAGCCATTATTCTGAACATGATGCCAGAGAAGAGCAGACATCTAGTGAAGGAAGCACCCCAAGTGGGGATGTTCTTCATGGGGCCTTTGTTAGTGAAGACAATTACTCTGGGNAGTCAAGCAAAACAAACAGTGATGACTCAGGAGAAGGAAAACTGGGGCTTCACAAAATTTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7672#0 TCCTGCAGCGCGTGGGCCGCGCCGGACTCCCCGACCGGCACTACGTCAGGATCCTGCACT 60
consensus_7672#1 ------------------------------------------------------TGCATG 6
****
consensus_7672#0 CGCTGGGGCAGGCCGTGCACGTCATCTCCCTCGACGGCAAGCTCATGTATTGGAACCGGT 120
consensus_7672#1 CTTTTAAGAGTAACAAACACA--GGCTACCAGGGTTACAAA--TAGAGTTCGCTCTCGGG 62
* * * * *** ** ** * *** * * * ***
consensus_7672#0 ACGCGGAGCATCTGTACGGCTATTCTGTTCCTGAAGCAGTTGGTCAGGATGCCCTTGAAT 180
consensus_7672#1 TCAAGACGGGTCAGAATTGCNATGATCAGTTCGGTGGTGCCTGTAAGA--GCCATTA--- 117
* * * ** * * ** ** * * * * ** ** *** **
consensus_7672#0 TAATTGTTCATCCTAGTGACTATGGTGCAGCAAACGACATCATACAGAATATATTC---A 237
consensus_7672#1 ----TTCTGAACATGATG-CCAGAGAAGAGCAGAC-ATCTAGTGAAGGAAGCACCCCAAG 171
* * * * * ** * * * **** ** * * * ** * * *
consensus_7672#0 TGGGGAAGTGTTGGAGAGGGAAATTTCCAGTTAAACACAAGTCAGGGGAGCGTTTCAACA 297
consensus_7672#1 TGGGGATGTTCTTCATGGGGCCTTTGTTAGT-GAAGACAATTACTCTGGGNAGTCAAGCA 230
****** ** * * *** ** *** ** **** * * * * * **
consensus_7672#0 TCGTCGCCAGTAACACGCCTTTGTATGATGATGATGGTAGCTTGGTAGGCCTCATCTGTC 357
consensus_7672#1 AAACAAACAGTGAT--GACTCAGGAGAAGGAAAACTGGGGCTTCACAAAATTTTTA---- 284
**** * * ** * * * ** * * **** * * *
consensus_7672#0 TCTCAACTGATACGCGGACATTGGAGGAGATACTTGGCCATTCAACCTCAGGGAAAGTGT 417
consensus_7672#1 ------------------------------------------------------------
consensus_7672#0 ATCCGAGTTCAGCAAAGCCGCGCGTTCAACTCAATGGGTCCAAAAGTGGTTTGCTAAACA 477
consensus_7672#1 ------------------------------------------------------------
consensus_7672#0 AAGTTTCTTGTGACTCCCAGCAACCTCTTCAATCTGCTATCACCTCCAGGATAACAAATT 537
consensus_7672#1 ------------------------------------------------------------
consensus_7672#0 TGAGTAACAAACACAGGCTACCAGGGTTACAAATAGAGTTCGCTCTCGGGTCAAGACGGG 597
consensus_7672#1 ------------------------------------------------------------
consensus_7672#0 TCAGAATTGCGATGAATCAGTTCGGTGGTGCCTGTGAGAGCCATTATTCTG 648
consensus_7672#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||