These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 942 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTGAAAACATTA-TCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCATGCCTTAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGT-CAAGGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCCACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAA-CCCAGAAACAGGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAA-CCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCAATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGAATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTGCTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTGC] [+] EMBL CF326991 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTGAAAACATTATTCAGCCCAGGATCAAATGTAATAGTTTTTAATGACAACGGGGATGCGACAACTATTTAAGTGCTGGCATGAACACAAACGGGCATGCCTTAACTAAAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGGGGACTAAGCGGGAGTATCAAAACAAATCCAAAAGGGAGCAAATGACAGCACTTCCAACAAACTGGCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGGGCTTGCTCTTTGCCTGCTTGGCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAAAAATTGCACTCCTTTGAACACCTTTATCCTTGTCACGT TAAGGAACTTGGAAAACTGCACGGGGCCACTAATACGTTCACTATTTTTTTTTGTGTAAAACTCCCGCATTGAAAAAAACAAAACCAACCAATCAA ] [-] EMBL CF326990 [ TTTTTTTTTTGAAAATTGAAAACATTA TCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCATGCCTTAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGT CAAGGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAA ] [+] EMBL CB672269 [ TCAGCCCAGGCCTAAAAGGAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCCTGCCATAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGTCCAAGAAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCCACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAA CCCAGAAACAGGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAA CCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCA ] [-] EMBL CF330364 [ GAATCCCAGCTCCAATGTCAAAGAGCCAACCCCAGAAACAGGCGGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAACCCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCGATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGAATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTGCTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTGC] consensusID : consensus_7684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAAACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTATCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAAGAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCAAAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTCATCAT] [+] EMBL CF330365 [TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAAACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTATCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAAGAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCAAAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTCATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7684#0 TTTTTTTTTTTT---------------TTTTTTTTTTTTTTTTTTTTTGAAAAT-TGAAA 44 consensus_7684#1 TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAA 60 ********** * * * * * * * * ******* ***** consensus_7684#0 ACATTATCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTA 104 consensus_7684#1 ACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTA 120 ********* **** ************** **** *********** ***** ******* consensus_7684#0 TCTAAGTGCTGGCATGAACACAGACGGTCATGC--CTTAACTAGAATAACAGGGAACAAA 162 consensus_7684#1 TCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAA 180 ************* ******************* ** * ******* ******** consensus_7684#0 AAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCA 222 consensus_7684#1 GAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCA 240 ******************** * ************** **************** consensus_7684#0 AAAGGCAGC-AAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAAC 281 consensus_7684#1 AAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAAC 300 ********* ********************************************* **** consensus_7684#0 TTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTC 341 consensus_7684#1 TTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTC 360 ******************* **************** *********************** consensus_7684#0 ATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGTCAA 401 consensus_7684#1 ATCAT------------------------------------------------------- 365 ***** consensus_7684#0 GGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCT 461 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 CCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCC 521 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 ACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAACCCAGAAACA 581 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 GGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAACCACATATATTTTAAGTCT 641 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 ACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCAC 701 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 TGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTA 761 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 TTACATGCAACACAGATTCAATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGA 821 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 ATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTG 881 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 CTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTG 941 consensus_7684#1 ------------------------------------------------------------ consensus_7684#0 C 942 consensus_7684#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||