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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1621 fasta sequence
[CCAAGCAGAGAGAATTAAAACATTGGAGCTGCAGCTTGCATCAGCTAACGAAAAGTTAAAGAGATCTGATTTGACTACTATGGAGACGATGACTGAGTATGAGAAGCAAAAAAGAATGTTGGAGGATCTGCAATTACGACTCGAAGAAGCTGAGCAACAAATTTTGGACGGAGAGAATTTGCGGAAAAGACTCCATAATACAATACTCGAGCTTAAGGGAAACATTCGAGTATTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGCTCAAATGTATTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCACAAGAAGATGTGTTCATTGAGATTTCCCAACTCATCCAAAGCGCCCTTGATGGCTACAAGGTGTGCATATTTGCATATGGCCAAACTGGCTCGGGTAAAACATACACAATGATGGGAAATCCAGAATTGCATGACCAGAAAGGATTAATTCCGAGATCACTTGAACAAATTTTCCAAACAAGCCAGGCTCTTATTTCACAGGGATGGAAATATAAGATGCAGGCATCTATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCGCACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGTAATACCCATGTATCAGATCTCACAATTGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAGGGAACAGACCAGCAGGTGCAAGGAGTGCTCAATCTAATCGATCTTGCCGGCAGTGAGCGGCTTAACAAGAGCGGTGCCACCGGAGATAGGCTAAAGGAGACACAGGCTATTAATAAGAGCCT-CTCATGCTTGAGCGATGT-AATCTTCTCCATTGCAAAGAAAGAGGAGCACGTTCCGTTCAGGAACTCAAAA-TTAACGTACTTGCTACAGCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCACGGGTGAACTCGT-GCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGGATGAGTTGGCTTGGACA-AAATGAATGTCCATGACTAATTGTATTTGTGTGTTGTTTGAGGGATGCAATGGATCATTTGCATCCCCTCCGTGTGTTGGTTGCTTAGAGGG-TGTGTATAATATTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGATAGTACTGTAGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTAGTAACAAGATGTGAGGTTGGTTGTATTTTATTGGAGAAGTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGATGATAAAGACAGACAAGTAATTGGAATTGAAATGCTCTGTTGCTTTTTAGTAAAAAAAAAAA]
[+] EMBL AK063949 [CCAAGCAGAGAGAATTAAAACATTGGAGCTGCAGCTTGCATCAGCTAACGAAAAGTTAAAGAGATCTGATTTGACTACTATGGAGACGATGACTGAGTATGAGAAGCAAAAAAGAATGTTGGAGGATCTGCAATTACGACTCGAAGAAGCTGAGCAACAAATTTTGGACGGAGAGAATTTGCGGAAAAGACTCCATAATACAATACTCGAGCTTAAGGGAAACATTCGAGTATTCTGTAGGGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAACTTAGGTCGTGGCATTGAGTTGACACATAATGCTCAAATGTATTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCACAAGAAGATGTGTTCATTGAGATTTCCCAACTCATCCAAAGCGCCCTTGATGGCTACAAGGTGTGCATATTTGCATATGGCCAAACTGGCTCGGGTAAAACATACACAATGATGGGAAATCCAGAATTGCATGACCAGAAAGGATTAATTCCGAGATCACTTGAACAAATTTTCCAAACAAGCCAGGCTCTTATTTCACAGGGATGGAAATATAAGATGCAGGCATCTATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCGCACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGTAATACCCATGTATCAGATCTCACAATTGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAGGGAACAGACCAGCAGGTGCAAGGAGTGCTCAATCTAATCGATCTTGCCGGCAGTGAGCGGCTTAACAAGAGCGGTGCCACCGGAGATAGGCTAAAGGAGACACAGGCTATTAATAAGAGCCT CTCATGCTTGAGCGATGT AATCTTCTCCATTGCAAAGAAAGAGGAGCACGTTCCGTTCAGGAACTCAAAA TTAACGTACTTGCTACAGCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCACGGGTGAACTCGT GCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGGATGAGTTGGCTTGGACA AAATGAATGTCCATGACTAATTGTATTTGTGTGTTGTTTGAGGGATGCAATGGATCATTTGCATCCCCTCCGTGTGTTGGTTGCTTAGAGGG TGTGTATAATATTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGATAGTACTGTAGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTAGTAACAAGATGTGAGGTTGGTTGTATTTTATTGGAGAAGTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGATGATAAAGACAGACAAGTAATTGGAATTGAAATGCTCTGTT ]
[+] EMBL AU091976 [ GCTGGAAATCTACAATGAAGCCATACGTGATCNGCTAGCCACTAATCGCACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGTAATACCCATGTATCAGATCTCACAATTGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGATCTGTTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAGGGAACAGACCAGCAGGTGCAAGGAGTGCTCAATCTAATCGATCTTGCCGGCAGTGAGCGGCTTAACAAGAGCGGTGCCACCGGAGATAGGCTAAAGGAGACACAGGCTATTAATAAGAGCCT CTCATGCNTGAGCGATGT AATCCTCTCCATTGCCAAGAAAGAGGAGCACGT ]
[+] EMBL AU030608 [ ggcCCTNCNCATGCTTGNGCGATGTAAACCTCCNCCA TGCAAAGNAAGAGGTGCACTTCCCGTTCAGGNACTCAAAATTTAACGTACTTGCTACAGCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGNGGTGTCGTCTACAGGGGNGTCCATTTGCTCGCTACGGTTCGCAGCACGGGTGAACTCGT GCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGGATGAGTTGGCTTGGACA AAATGAATGTCCATGACTAATTGTATTTGTGTGTTGTTTGAGGGATGCAATGGATCATTTGCATCCCCTCCGTGTGTTGGTTGCTTAGAGGG TGTGTATAATATTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGATAGTACTGTNGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTNGTAACAAGATGTGAGGTTGGTTGTATTTTATTGGAGAAGTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGATGATAAAGACAGACAAGTAATTGGAATTGANATGCTCTGTTGCTTTTTAGTAAAAAAAAAAA]
[+] EMBL BI806855 [ gttnAACTCGTGGCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGGATGAGTTGGCTTGGACATANATGNATGTCCATGACTAATTGTATTTGTGT TTGTTTGAGGGATGCAATGGATCATTTGCATCCCCTCCGTGTGTTGGTTGCTTAGAGGGTTGTGTATAATATTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGATAGTACTGTAGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTAGTAACAAGATGTGAGGTTGGTTGTATTTTATTGGAGAAGTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGATGATAAAGACAGACAAGTAATTGGAATTGAAATGCTCTGTTGCTTTTTAGTAAAAAA ]
consensusID : consensus_7687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCGCACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGCAATACCCATGTATCAGATCTCACAATCGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGGTTACACTCTAGTTCTTCTCATCAGTTTTTCAAATCTTCAATTAAATTCATGAGAACAGAAGAATACAAAGAAGGCAAAGAACCTGGATATAGTTTCTGTGAGCACATAGAAACATAATCAGGTTAGCATAAAGCCTGAAGTGAAGTTAGAAGCATAATTTCAATGAAATGCAATAAGTCAAAAACTAGCTTTATTATGACACCATTTTCAAAATCTTTGTGCTTTACATACTGTTGTGCTATAGAGTGCACAATAATTTAGCTGAATTCTCCAAGAAAGAGTTCCGAATCTGTACCTTANATTTGCTGCCATACGTTCTACACAGCTTTATTATTTATCTGCAGATCTATTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAAT]
[+] EMBL CA757341 [TATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCGCACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGCAATACCCATGTATCAGATCTCACAATCGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCTCCTCAAGCGGGCTGCTCAGAGCAGGTTACACTCTAGTTCTTCTCATCAGTTTTTCAAATCTTCAATTAAATTCATGAGAACAGAAGAATACAAAGAAGGCAAAGAACCTGGATATAGTTTCTGTGAGCACATAGAAACATAATCAGGTTAGCATAAAGCCTGAAGTGAAGTTAGAAGCATAATTTCAATGAAATGCAATAAGTCAAAAACTAGCTTTATTATGACACCATTTTCAAAATCTTTGTGCTTTACATACTGTTGTGCTATAGAGTGCACAATAATTTAGCTGAATTCTCCAAGAAAGAGTTCCGAATCTGTACCTTANATTTGCTGCCATACGTTCTACACAGCTTTATTATTTATCTGCAGATCTATTGGAAGAACACAGATGAACGAAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7687#0 CCAAGCAGAGAGAATTAAAACATTGGAGCTGCAGCTTGCATCAGCTAACGAAAAGTTAAA 60
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GAGATCTGATTTGACTACTATGGAGACGATGACTGAGTATGAGAAGCAAAAAAGAATGTT 120
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GGAGGATCTGCAATTACGACTCGAAGAAGCTGAGCAACAAATTTTGGACGGAGAGAATTT 180
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GCGGAAAAGACTCCATAATACAATACTCGAGCTTAAGGGAAACATTCGAGTATTCTGTAG 240
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GGTGCGACCTTTATTGCCAAATGAATCAGGAGCTGTTGCTTATCCAAAGAGTGGAGAAAA 300
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 CTTAGGTCGTGGCATTGAGTTGACACATAATGCTCAAATGTATTCTTTCACATTTGACAA 360
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 AGTATTTGAGCAGTCGGCATCACAAGAAGATGTGTTCATTGAGATTTCCCAACTCATCCA 420
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 AAGCGCCCTTGATGGCTACAAGGTGTGCATATTTGCATATGGCCAAACTGGCTCGGGTAA 480
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 AACATACACAATGATGGGAAATCCAGAATTGCATGACCAGAAAGGATTAATTCCGAGATC 540
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 ACTTGAACAAATTTTCCAAACAAGCCAGGCTCTTATTTCACAGGGATGGAAATATAAGAT 600
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GCAGGCATCTATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCG 660
consensus_7687#1 ---------TATGCTGGAAATCTACAATGAAGCCATACGTGATCTGCTAGCCACTAATCG 51
***************************************************
consensus_7687#0 CACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGTAA 720
consensus_7687#1 CACAACTGTTCAAGATGGTGGCGCTTCAAAGTACAGTATCAAGCATGATGCCAATGGCAA 111
********************************************************* **
consensus_7687#0 TACCCATGTATCAGATCTCACAATTGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCT 780
consensus_7687#1 TACCCATGTATCAGATCTCACAATCGTCGATGTATCGAGTATCAATGAAGTTTCTTCTCT 171
************************ ***********************************
consensus_7687#0 CCTCAAGCGGGCTGCTCAGAGCAGATCTGTTGGAAGAACACAGATGAACGAAGAATCATC 840
consensus_7687#1 CCTCAAGCGGGCTGCTCAGAGCAGGTT-------ACACTCTAGTTCTTC------TCATC 218
************************ * * * ** * * *****
consensus_7687#0 TAGAAGTCATTGTGTGTTCACGCTTCGAATTTTTGGTGTCAATGAGGGAACAGACCAGCA 900
consensus_7687#1 ---AGTTTTTCAAATCTTCAA---TTAAATTCATGA---GAACAGAAGAATA---CAAAG 266
* * * * **** * **** ** ** *** * **
consensus_7687#0 GGTGCAAGGAGTGCTCAATCTAATCGATCTTGCCGGCAGTGAGCGGCTTAACAAGAGCGG 960
consensus_7687#1 AAGGCAAAGAAC-CTGGATATAGT---TTCTGTGAGCACATAGAAACATAATCAGGTTAG 322
**** ** ** ** ** * * ** *** ** * *** ** *
consensus_7687#0 TGCCACCGGAGATAGGCTAAAGGAGACACAGGCTATTAATAAGAGCCTCTCATGCTTGAG 1020
consensus_7687#1 CATAA--AGCCTGAAGTGAAGTTAGAAGCATAATTTCAATGAAA--------TGCAATAA 372
* * * * ** *** ** * * *** * * *** *
consensus_7687#0 CGATGTAATCTTCTCCATTGCAAAGAAAGAGGAGCACGTTCCGTTCAGGAACTCAAAATT 1080
consensus_7687#1 GTCAAAAACTAGCTTTATTATGACA---------------CCATTT------TCAAAATC 411
** ** *** * ** ** *******
consensus_7687#0 AACGTACTTGCTACAGCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCT 1140
consensus_7687#1 TTTGTGCTTTACATACTGTTGTGCTATAGAGTGC------ACAATAATTTAGCTGAAT-- 463
** *** * * ** * ** * *** * ** * *****
consensus_7687#0 GTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCACGGGT 1200
consensus_7687#1 -TCTCCAAGAA----------AGAGTTCCGAATCTGTACCTTANATTTGCTGCCATACGT 512
****** ** * *** ** * ** ** ** **
consensus_7687#0 GAACTCGTGCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGG 1260
consensus_7687#1 ---TCTACACAGCTTT---ATTATTTATCTGCAGATCTATTGGAAGAACACAGATGAACG 566
* ** ** * ** ** * * * * * * * ** *
consensus_7687#0 ATGAGTTGGCTTGGACAAAATGAATGTCCATGACTAATTGTATTTGTGTGTTGTTTGAGG 1320
consensus_7687#1 AAGAATCATCTAGAAGTCATTGTGTGTTCACGCTTCGA-ATTTTTG-GTGTCAAT----- 619
* ** * ** * * * ** *** ** * * * **** **** *
consensus_7687#0 GATGCAATGGATCATTTGCATCCCCTCCGTGTGTTGGTTGCTTAGAGGGTGTGTATAATA 1380
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 TTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGA 1440
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 TAGTACTGTAGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTAGTAACAAGATGTGA 1500
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GGTTGGTTGTATTTTATTGGAGAAGTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGAT 1560
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 GATAAAGACAGACAAGTAATTGGAATTGAAATGCTCTGTTGCTTTTTAGTAAAAAAAAAA 1620
consensus_7687#1 ------------------------------------------------------------
consensus_7687#0 A 1621
consensus_7687#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||