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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1310 fasta sequence
[TCCCCGCTCCCCTCTCGAGCCGAACCCCAAATCTCTCTCTCCTCTCTCTCTCTCTCTAGCAGCGGCGGCGGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAAACCCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCGGAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTAGTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAACAAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCGAGCGCCCACCATGT-GGAGATGAACCCCAGCGATGCTGGGTTTCAGGACA-GGTATGTTGTTCAGGAAGTCATTAAAGAGATGGCGAAGAATAGGCCAATTGATGCCAAGGGCAAGAGAGCATTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTTCGTAGGACAA-TGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCATCAAAGGTGACAGAGGCTGTAAGGTCTCGTTGCTTGAACGTGCGAGTGAATGCACCCAGTGAAGACCAGATCGTCCAAGTTCTGGAGTTCATTGGGAAGAAAGAAAATCTGCAGCTTCCATTTGGATTTGCTGCTAGGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTGTTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTTACATCAAATCAAGTAGCACCTCCTCTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAGCCCTAAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCTGAAAGCATCTTAAAGAAGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAACATGAAATTTGTCACTGGGCTGCACACTATGAACACAAGATGCGTCTTGGGTCCAAGGCCATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCTTGTCTCTACATTTGGCTGAGCATCTACAAGG-AAGCTGCTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTCTCCATGCTAGCCATCTTGGCCAATGTAATCGGTTCGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGTGACATTGAGCTGGCCAT]
[+] EMBL AB109201 [TCCCCGCTCCCCTCTCGAGCCGAACCCCAAATCTCTCTCTC CTCTCTCTCTCTCTAGCAGCGGCGGCGGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAAACTCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCGGAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTAGTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAACAAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCGAGCGCCCACCATGT GGAGATGAACCCCAGCGATGCTGGGTTTCAGGACA GGTATGTTGTTCAGGAAGTCATTAAAGAGATGGCGAAAAATAGGCCAATTGATGTCAAGGGCAAGAGAGCATTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTTCGTAGGACAA TGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCATCAAAGGTGACAGAGGCTGTAAGGTCTCGTTGCTTGAATGTGCGAGTGAATGCACCCAGTGAAGACCAGATCGTCCAAGTTCTGGAGTTCATTGGGAAGAAAGAAAATCTGCAGCTTCCATTTGGATTTGCTGCTAGGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTGTTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTTACATCAAATCAAGTAGCACCTCCTCTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAGCCCTAAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCTGAAAGCATCTTAAAGAAGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAACATGAAATTTGTCACTGGGCTGCACACTATGAACACAAGATGCGTCTTGGGTCCAAGGCCATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCTTGTCTCTACATTTGGCTGAGCATCTACAAGGTAAGCTGCTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTCTCCATGCTAGCCATCTTGGCCAATGTAATCGGTTCGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGTGACATTGAGCTGGCCA ]
[+] EMBL AK103751 [ CCCGCTCCCCTCTCGAGCCGAACCCCAAATCTCTCTCTCCTCTCTCTCTCTCTCTAGCAGCGGCGGCGGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAAACCCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCGGAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTAGTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAACAAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCGAGCGCCCACCATGT GGAGATGAACCCCAGCGATGCTGGGTTTCAGGACA GGTATGTTGTTCAGGAAGTCATTAAAGAGATGGCGAAGAATAGGCCAATTGATGCCAAGGGCAAGAGAGCATTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTTCGTAGGACAA TGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCATCAAAGGTGACAGAGGCTGTAAGGTCTCGTTGCTTGAACGTGCGAGTGAATGCACCCAGTGAAGACCAGATCGTCCAAGTTCTGGAGTTCATTGGGAAGAAAGAAAATCTGCAGCTTCCATTTGGATTTGCTGCTAGGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTGTTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTTACATCAAATCAAGTAGCACCTCCTCTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAGCCCTAAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCTGAAAGCATCTTAAAGAAGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAACATGAAATTTGTCACTGGGCTGCACACTATGAACACAAGATGCGTCTTGGGTCCAAGGCCATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCTTGTCTCTACATTTGGCTGAGCATCTACAAGG AAGCTGCTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTCTCCATGCTAGCCATCTTGGCCAATGTAATCGGTTCGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGTGACATTGAGCTGGCCtt]
[+] EMBL CF320141 [ CCCGCTCCCCTCTCGAGCCGAACCCCAAATCTCTCTCTCCTCTCTCTCTCTCTCTAGCAGCGGCGGCGGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAAACCCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCGGAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTAGTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAACAAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCGAGCGCCCACCATGTGGGAGATGAACCCCAGCGATGCTGGGTTTCAGGACAGGGTATGTTGTTCAGGAAGTCATTAAAGAGATGGCGAAGAATAGGCCAATTGATGCCAAGGGCAAGAGAGCATTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTTCGTAGGACAAGGGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCATCA ]
[+] EMBL AK059559 [ GGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAAACCCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCGGAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTAGTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAACAAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCGAGCGCCCACCATGT GGAGATGAACCCCAGCGATGCTGGGTTTCAGGACA GGTATGTTGTTCAGGAAGTCATTAAAGAGATGGCGAAGAATAGGCCAATTGATGCCAAGGGCAAGAGAGCATTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTTCGTAGGACAA TGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCATCAAAGGTGACAGAGGCTGTAAGGTCTCGTTGCTTGAACGTGCGAGTGAATGCACCCAGTGAAGACCAGATCGTCCAAGTTCTGGAGTTCATTGGGAAGAAAGAAAATCTGCAGCTTCCATTTGGATTTGCTGCTAGGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTGTTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTTACATCAAATCAAGTAGCACCTCCTCTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAGCCCTAAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCTGAAAGCATCTTAAAGAAGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAACATGAAATTTGTCACTGGGCTGCACACTATGAACACAAGATGCGTCTTGGGTCCAAGGCCATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCTTGTCTCTACATTTGGCTGAGCATCTACAAGG AAGCTGCTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTCTCCATGCTAGCCATCTTGGCCAATGTAATCGGTTCGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGTGACATTGAGCTGGC ]
consensusID : consensus_7691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[TCAAGTAGCCCCTCCTTTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAAAACCAAGCCCTAAAAGGGTATTTTCTGTGGGCCAAAAGTTTTACGAATTACTTGTGAATTGTATCCCCCCTGAAAGCATTTTAAAAAAGTTGTCGGCGGAGTTACTGAAAAAATTAGACTTTGACTTTAAACATGAAATTTGTCCCTGGGGTGCCCCCTATGAACACAAAATGGGTTTTGGGTCCAAGGCCATTTTTCACCTAAAAGCTTTTGTTGCCAAGTTCATGAGCATTTACAAGGAATTTTTTGTTTTTACATTTGGGTGAGCATTTACAAGGAAGCTGGTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTTTCCATGGTAACCATTTTGGCCAATGTAATCGGTTTGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF320142 [TCAAGTAGCCCCTCCTTTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAAAACCAAGCCCTAAAAGGGTATTTTCTGTGGGCCAAAAGTTTTACGAATTACTTGTGAATTGTATCCCCCCTGAAAGCATTTTAAAAAAGTTGTCGGCGGAGTTACTGAAAAAATTAGACTTTGACTTTAAACATGAAATTTGTCCCTGGGGTGCCCCCTATGAACACAAAATGGGTTTTGGGTCCAAGGCCATTTTTCACCTAAAAGCTTTTGTTGCCAAGTTCATGAGCATTTACAAGGAATTTTTTGTTTTTACATTTGGGTGAGCATTTACAAGGAAGCTGGTGCATGTCCATTTCCGGCAACACAAGGATGTTGGGAAACTTTCCATGGTAACCATTTTGGCCAATGTAATCGGTTTGATCAACGCAACGGGATCAAGTTTGTAGCAGGTTTATGTGAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7691#0 TCCCCGCTCCCCTCTCGAGCCGAACCCCAAATCTCTCTCTCCTCTCTCTCTCTCTCTAGC 60
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 AGCGGCGGCGGCGGCGGCGAGGCGAGGAAGATGCTGTGGGTGGACAAGTACAGGCCGAAA 120
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 ACCCTAGACAAGGTCACCGTCCATGACCAGGTCGCGCAAAACCTCAAGAAGCTGGTGGCG 180
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 GAGCAGGATTGCCCGCACCTGCTCTTCTATGGGCCGTCGGGGTCCGGGAAGAAAACCCTA 240
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 GTCATGGCCCTCATCAAGCAGATGTTCGGCGCAGGCGCGGATAAGGTGAAGATGGAGAAC 300
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 AAGACATGGAAGATCGATACTGGGTCGAGGAATATTGAGATAGAACTGGCAATGTTGTCG 360
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 AGCGCCCACCATGTGGAGATGAACCCCAGCGATGCTGGGTTTCAGGACAGGTATGTTGTT 420
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 CAGGAAGTCATTAAAGAGATGGCGAAGAATAGGCCAATTGATGCCAAGGGCAAGAGAGCA 480
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 TTTAAAGTCCTTGTCCTTAATGAAGTCGACAAGCTCTCACGAGAAGCCCAGCATTCCCTT 540
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 CGTAGGACAATGGAGAAGTACAGTGCATCATGCAGGCTGATATTGTGCTGTAATAGCTCA 600
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 TCAAAGGTGACAGAGGCTGTAAGGTCTCGTTGCTTGAACGTGCGAGTGAATGCACCCAGT 660
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 GAAGACCAGATCGTCCAAGTTCTGGAGTTCATTGGGAAGAAAGAAAATCTGCAGCTTCCA 720
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 TTTGGATTTGCTGCTAGGATAGCAGCACAATCGAACCGTAACCTGAGACGAGCGATACTG 780
consensus_7691#1 ------------------------------------------------------------
consensus_7691#0 TTTTTTGAGACCTGCAAAGTCCAGCAATACCCATTTACATCAAATCAAGTAGCACCTCCT 840
consensus_7691#1 --------------------------------------------TCAAGTAGCCCCTCCT 16
********* ******
consensus_7691#0 CTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAGAACAAAGCCCT 900
consensus_7691#1 TTTGACTGGGAGCAATATGTGTCAGAAATAGCAGCTGATATCATGAAAAAACCAAGCCCT 76
*********************************************** *** *******
consensus_7691#0 AAAAGGCTATTTGCTGTGCGCCAGAAGTTCTACGAATTACTTGTGAATTGTATCCCACCT 960
consensus_7691#1 AAAAGGGTATTTTCTGTGGGCCAAAAGTTTTACGAATTACTTGTGAATTGTATCCCCCCT 136
****** ***** ***** **** ***** ************************** ***
consensus_7691#0 GAAAGCATCTTAAAGAAGTTGTTGGCGGAGTTACTGAAGAAATTAGACTCTGACTTGAAA 1020
consensus_7691#1 GAAAGCATTTTAAAAAAGTTGTCGGCGGAGTTACTGAAAAAATTAGACTTTGACTTTAAA 196
******** ***** ******* *************** ********** ****** ***
consensus_7691#0 CATGAAATTTGTCACTGGGCTGCACACTATGAACACAAGATGCGTCTTGGGTCCAAGGCC 1080
consensus_7691#1 CATGAAATTTGTCCCTGGGGTGCCCCCTATGAACACAAAATGGGTTTTGGGTCCAAGGCC 256
************* ***** *** * ************ *** ** **************
consensus_7691#0 ATTTTTCACCTAGAAGCTTTCGTCGCCAAGTTCATGAGCATCTACAAGGAATTTCTTGTC 1140
consensus_7691#1 ATTTTTCACCTAAAAGCTTTTGTTGCCAAGTTCATGAGCATTTACAAGGAATTTTTTGTT 316
************ ******* ** ***************** ************ ****
consensus_7691#0 TCTACATTTGGCTGAGCATCTACAAGGAAGCTGCTGCATGTCCATTTCCGGCAACACAAG 1200
consensus_7691#1 TTTACATTTGGGTGAGCATTTACAAGGAAGCTGGTGCATGTCCATTTCCGGCAACACAAG 376
* ********* ******* ************* **************************
consensus_7691#0 GATGTTGGGAAACTCTCCATGCTAGCCATCTTGGCCAATGTAATCGGTTCGATCAACGCA 1260
consensus_7691#1 GATGTTGGGAAACTTTCCATGGTAACCATTTTGGCCAATGTAATCGGTTTGATCAACGCA 436
************** ****** ** **** ******************* **********
consensus_7691#0 ACGGGATCAAGTTTGTAGCAGGTTTATGTGAGTGACATTGAGCTGGCCAT---------- 1310
consensus_7691#1 ACGGGATCAAGTTTGTAGCAGGTTTATGTGAGGTAAAAAAAAAAAAAAAAAAAAAAAAAA 496
******************************** * * * *
consensus_7691#0 -------
consensus_7691#1 AAAAAAA 503
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||