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Oryza sativa
cluster # 77 cluster # 77       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_77#0 length = 705 sequences # 1  
consensus_77#1 length = 700 sequences # 1  

consensusID : consensus_77#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence
                              [TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT]

[+] EMBL AK105356             [TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT]


>consensus_77#0 TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGC CACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCC AACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTC CTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACG CGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTT GGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCC AACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGC GGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCA GGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACA CTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTG ATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGA TGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT



consensusID : consensus_77#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT]

[+] EMBL AK061607             [ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT]


>consensus_77#1 ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACT CACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCAC CACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGC GGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCC CGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGA GGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGG TGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCA GCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGC CACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGA ATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGA TGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTG GGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_77#0      -TGACCACGAGCACGAG--CGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGG-AT 56
consensus_77#1      ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGC-CGAGCTGAGCTGAGCAAAACGCCAC 59
                       **  ****  ****    ** ** ** **** ** **   *  * * *   **  * 

consensus_77#0      CTGCCACCGTCGA-GCCGCGGGGAGGGCAG--ATCCGCCGCTGCCGGGCCGCGGGAAGGG 113
consensus_77#1      TCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAA--C 117
                       ***** * *  * * *    *  **    * ** *  *  *** ******  **   

consensus_77#0      CGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCAC-CGGTACGTCCGTCTCCT 172
consensus_77#1      CACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTC 177
                    * ** *** *  *  *   **   ** * *  ** ** **   **** ** *** * *  

consensus_77#0      C-CTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGA 231
consensus_77#1      CGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGC-GGCGCCGACGGTGGCGTCCCCCT 236
                    * *  *   *   ***  * ** *  *  * *  ** *   *** *   ** * ** *  

consensus_77#0      GCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCA----TGGGGAGGGCGG 287
consensus_77#1      CCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGG 296
                     * * * *   *  *  *    ***   *  ** *  *  *       *** * ******

consensus_77#0      ATCCATCACCGTTGG--GCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGG----GAGGG 341
consensus_77#1      AGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGG 356
                    *     *  **  **  ** * * **  ** ***   * ** **  * ***    *  **

consensus_77#0      CGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGC 401
consensus_77#1      TGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCG-GCGGAGGTCGCCGGGGAAGGG 415
                     *  *     * **       *  **      * * **  *      * ** *     * 

consensus_77#0      GTGC---CCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTC-CTGCTCCTGTC 457
consensus_77#1      GTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTC 475
                    ****     *   *** ** *  * *** * *   *      ****   * *   * ***

consensus_77#0      CGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGA-GGCATCCTGAGG 516
consensus_77#1      GCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGG 535
                      ** *   ** * *** *     *    **   ** *** ** * * ************

consensus_77#0      CATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGC 576
consensus_77#1      CCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCC 595
                    * *****************  ** ************** * *     *  ***  **  *

consensus_77#0      TTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTT 636
consensus_77#1      ATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAAC----TGGATGTGATTATCTGCTGAT 651
                     *   * * *       *    *** **  **       *  **  ****** ** ** *

consensus_77#0      AA-TCTGTTTATGTG--TTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATG 693
consensus_77#1      GACTCTGTGGGTGTAAATTAATTGTCATAG-AGTGATGGATCATGGTGGT---------- 700
                     * *****   ***   **  *  * **   * ** **  **   **  *          

consensus_77#0      CCAATATTATGT 705
consensus_77#1      ------------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)