These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_77#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT] [+] EMBL AK105356 [TGACCACGAGCACGAGCGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGGATCTGCCACCGTCGAGCCGCGGGGAGGGCAGATCCGCCGCTGCCGGGCCGCGGGAAGGGCGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCACCGGTACGTCCGTCTCCTCCTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGAGCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCATGGGGAGGGCGGATCCATCACCGTTGGGCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGGGAGGGCGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGCGTGCCCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTCCTGCTCCTGTCCGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGAGGCATCCTGAGGCATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGCTTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTTAATCTGTTTATGTGTTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATGCCAATATTATGT] consensusID : consensus_77#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT] [+] EMBL AK061607 [ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGCCGAGCTGAGCTGAGCAAAACGCCACTCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAACCACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTCCGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGCGGCGCCGACGGTGGCGTCCCCCTCCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGGAGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGGTGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCGGCGGAGGTCGCCGGGGAAGGGGTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTCGCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGGCCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCCATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAACTGGATGTGATTATCTGCTGATGACTCTGTGGGTGTAAATTAATTGTCATAGAGTGATGGATCATGGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_77#0 -TGACCACGAGCACGAG--CGCGGGCGGAGGAGCTCGGGCGTGGGCGGGGAGGGCGG-AT 56 consensus_77#1 ACCACTCCGAGTCCGAGGCTCCGAGCAGACGAGC-CGAGCTGAGCTGAGCAAAACGCCAC 59 ** **** **** ** ** ** **** ** ** * * * * ** * consensus_77#0 CTGCCACCGTCGA-GCCGCGGGGAGGGCAG--ATCCGCCGCTGCCGGGCCGCGGGAAGGG 113 consensus_77#1 TCACCACCATGGCCGTCTCCACCACCGCCTCCAACCTCGTCCTCCGCGCCGCGCCAA--C 117 ***** * * * * * * ** * ** * * *** ****** ** consensus_77#0 CGCCTCCAACCTCGTCTTTCGGGCCGCGCCATCCACCACCAC-CGGTACGTCCGTCTCCT 172 consensus_77#1 CACCACCACCACCCGCCGCCGCCGCGTGGCCGCCTCCGCCGTGCGGTTCGACCGGCGCTC 177 * ** *** * * * ** ** * * ** ** ** **** ** *** * * consensus_77#0 C-CTCCTTCCTCCCTCTCGGCCTCTCCCTCAGCCGCCGAATCCGCCACGGGTGGCCACGA 231 consensus_77#1 CGCGGCGCTCCTGCTCCTGTCCGCGGCGGCGGGTGC-GGCGCCGACGGTGGCGTCCCCCT 236 * * * * *** * ** * * * * ** * *** * ** * ** * consensus_77#0 GCTCGGACGCGGGTGAGGAGGGCGGATCCGCCGCCGCCGTGCCA----TGGGGAGGGCGG 287 consensus_77#1 CCCCCGCCAACGCCGCTGGCATCGGGCTCTTCGGCATCAGGAAGAAGCTGGAGCGGGCGG 296 * * * * * * * *** * ** * * * *** * ****** consensus_77#0 ATCCATCACCGTTGG--GCCGCGGGGAGGGCGGATCTGCCGCCGCCGCAGG----GAGGG 341 consensus_77#1 AGGAGGCGGCGGCGGAGGCGGTGCGGGAGGTGGAGGAGGCGGCGGTGGAGGCCGCGGAGG 356 * * ** ** ** * * ** ** *** * ** ** * *** * ** consensus_77#0 CGCCTCCACCGCCGCCTCCAACCTCGTCTTCTGGGCCGCACCACCACCACCCGCCGTCGC 401 consensus_77#1 TGGGTGGGGAGGCGGTGAAGGCAGCGGAGAAGGAGGCG-GCGGAGGTCGCCGGGGAAGGG 415 * * * ** * ** * * ** * * ** * * consensus_77#0 GTGC---CCGCCTCCGCCGTGCGGTTCGACCGGCCCTCCGCGGTGCTC-CTGCTCCTGTC 457 consensus_77#1 GTGCAGCTGGTGGCCGGCGCGGAGCTCGCCGGAGACGGGCTCGTGCAGGCCGGGGCGGTC 475 **** * *** ** * * *** * * * **** * * * *** consensus_77#0 CGCGGCGGAGACGGGCTTGTGCAGGCCAGGGCGGTCGCCGCCGCCGA-GGCATCCTGAGG 516 consensus_77#1 GCCGCCACCGAGGCGCTCGGCGTCGTGGTGGGCCTCTCCGTCGTCAATGGCATCCTGAGG 535 ** * ** * *** * * ** ** *** ** * * ************ consensus_77#0 CATGAATCCTAGAGAGAGAGAACACTGCTGCTGCATGCATGGATGGTTTCAGTGAAGAGC 576 consensus_77#1 CCTGAATCCTAGAGAGAGATCACTCTGCTGCTGCATGCGTAGTGCTCTGTAGTTTAGGCC 595 * ***************** ** ************** * * * *** ** * consensus_77#0 TTAACTAGATGTGATTATCTGCTGATGACTTTGTGGGTGTAAATCAGATTATGTGTTGTT 636 consensus_77#1 ATGGATGGTTTCAGACTTTCAGTGAAGAGCTTAAC----TGGATGTGATTATCTGCTGAT 651 * * * * * *** ** ** * ** ****** ** ** * consensus_77#0 AA-TCTGTTTATGTG--TTGTTGATGATGCCAATGTTGATTCTCTGTATTTGGATTGATG 693 consensus_77#1 GACTCTGTGGGTGTAAATTAATTGTCATAG-AGTGATGGATCATGGTGGT---------- 700 * ***** *** ** * * ** * ** ** ** ** * consensus_77#0 CCAATATTATGT 705 consensus_77#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||