These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 651 fasta sequence [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGCGGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAAAAAAA] [+] EMBL CA755326 [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGCGGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAAAAAAA] [+] EMBL AU198165 [GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAGCTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGGCCGCACGAGGAGTACGTGCCGGCGGCGGAGGTGGCGTCGGCGCTGCCGGTGCCGATCCCCGACGGGAACCCCGTGGAGGGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGCTACGGCACGGCGGCG ] consensusID : consensus_7712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 217 fasta sequence [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU198166 [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU198206 [ATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTTAATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTATTTTTNGAGGGGATANACAGTGAGTTCCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTGTCGTGCCANCTCCGACGACCTCGACGGCGGCGTNGAACGTGGGNANTTGCCGATTACGACTTCCAAGAAGATACCANTTGGAAGGAGCAGGGCCGCACGAGGAGTACGTNCCGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG] [+] EMBL OSS1488A [CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTGTCGTGCCANCTCCGACGACCTCGACGGCGGCGTNGAACGTGGGNANTTGCCGATTACGACTTCCAAGAAGATACCANTTGGAAGGAGCAGGGCCGCACGAGGAGTACGTNCCGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7712#0 GACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGC-GGCAGGCGCCGGCGAAGGTG 59 consensus_7712#2 ----------------------------CCTACGGCGGCCGGCAGGNGCGGCCGAAGGTG 32 consensus_7712#1 -------------------------ATATTTGAGATAATAATTAGTTAATTACTCGGTTA 35 * * ** * * * consensus_7712#0 TCGTGCCAGCTCCGACGACCTCG---ACGGCGGCGTCGAACGTGG-CAGCTGCCGAT-AC 114 consensus_7712#2 TCGTGCCANCTCCGACGACCTCG---ACGGCGGCGTNGAACGTGGGNANTTGCCGATTAC 89 consensus_7712#1 TAAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACNCTCATGTTAATGTT 95 * ** * * ** * *** ** ** * ** ** consensus_7712#0 GACTTCCAAGAAGATACCAGT-GGAAGGAGCAGGG--CCGCACG----AGGAGTACGTGC 167 consensus_7712#2 GACTTCCAAGAAGATACCANTTGGAAGGAGCAGGG--CCGCACG----AGGAGTACGTNC 143 consensus_7712#1 AATTACCTAAGTAATACTCCTATATATGATTAATGATTTGTATATGTTAATGGNGATTAT 155 * * ** * **** * * ** * * * * * * * consensus_7712#0 CGGCGGCGGAGGTGGCGTCGGCGCTGCCGGT-GCCGATCCCCGACGGGAACCCCGTGGAG 226 consensus_7712#2 CGGCGGCGGAGGTNGCGTCGGCGCTTCCGGTTNCCGATCCCCGACGGG------------ 191 consensus_7712#1 TTTTNGAGGGGATAGACAGTGAGTTCCTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 215 * ** * * * * * * * * * * consensus_7712#0 GGCGCCTTCACCAACGGCGGCCTCGGCGGCAACCAGGCCTTCTTCCCCGGCTCCAGCGGC 286 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 AA---------------------------------------------------------- 217 consensus_7712#0 TACGGCACGGCGGCGGGCCTCGGCGCCGGCGGCTTCGGCCCGTACGGCGGCTACGGCGGC 346 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 GGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACC 406 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 GGCTCGCCGGCCGGATCTTGCGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCC 466 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 ATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTATAAATCCTAATTAATTAAGCT 526 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 AGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAACTAATACTCCT 586 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 ATATATGATTAATGATTTGTATATGTTAATGGTGATTATTTTTCGAGGGGATAAAAAAAA 646 consensus_7712#2 ------------------------------------------------------------ consensus_7712#1 ------------------------------------------------------------ consensus_7712#0 AAAAA 651 consensus_7712#2 ----- consensus_7712#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||