Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7713 cluster # 7713       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7713#0 length = 2314 sequences # 2  
consensus_7713#1 length = 1542 sequences # 1  
consensus_7713#2 length = 264 sequences # 1  
consensus_7713#3 length = 122 sequences # 1  

consensusID : consensus_7713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2314
fasta sequence
                              [GCTAAATTTATTGTATTACCATTCTATAACTTTTGTCTAACACCCCTGGTTTAAAATTTTCATGTGGAACCTGCTATGGATTGGTTGGGATATTTTCATGAGATCTCTTCATCAAAGCATGATCTGTGCTGTTATTACAATATAAATGGTGCACGTTGCTCTTGTTTACACTTATCTGTGATTTGTTAATCTTCTGTTAAACAATTTGCTCCCTATGTTTGTCCTGCCCTGAAATCTGGACTTGTTTAGCACAAATGGTGCATTTTCTGAGACATGTGAATGGCTTTATCTCTAGGTCTATGGTTTAATTTGGCGTAGGTTGATTTTTGATTCTATACTTTTGTTTCCCTATCATTTGACGCTTTACACACAAAAAAAAAAACTTCACCGTTATTGACTGACTGGCATTGAATATGAAGCATCTAGCTGTAATAGTTTCTCAGCCATTAGTATGGTTACGAGTTGTTATGCCATACTGATTGTATTTATCCTTTTTTTCCTGGAGTGGGCAAGGGAAGCTGTTTTTGTTTTTATTCATCCTCAGTAAAAATTTTCATCTAGATCAGATTATGTTTCCTTTGTTTGCAAGTGATGTTTAAAAGAGAAAAAAAAATAACATGTGGGGGCTAAATCAGTGAACAATATAAAATTTTTCATGAAATGCTGGTGAAAAGCAGATAAGGTGTGGCTTGAGCATAGTAAGTTTTGACCTATAGTGAGGCTGTACAAATCTTCTGATGTCAATCATCTTGATAATGATAAATGCATGAGTTCTTGCGCTTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGCCGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTCTTCAGCGGGTTCAACGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGCGCAGTGGCGACGGCGTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGGGCCTTCAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACCATGTTCCAGGGGCTGGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTCCTCTGCCTGACCAACAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCGGGGGACGCCGGCCACAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAGTCCTACTTCAAGAACCACGTCAAGACGGTGCTGACGAGGGTGAACACCCTGACGGGCGTGGCGTACAAGGACGACCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTACGCCGACCCAACCGGCGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGAGCGTCGACGGCCGGCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCGAGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCACGCACCGCACCGCCGCCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTCCAGCGCCGACGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTGACGCCACGGCGGCGTACCTCGGCATGCCGCTTCT-CGTCACCG-AGTACGGCAAGTTCCTCTGGAAGGAGGTCGGCGCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCCATCTACGCC-TCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTGCTCGACGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTCAATGGCCAGGACGCGGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTAAGCAACTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTGGCTTGTTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTTTTGTGATTTGTTCCATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACATGTTGCAACTGTAACTAGGACAAATTTTCAGGATTTGTTCAAGATGATTGTCCTAATGTTTTGTACCGTNGTTTTCTTGTAGACTATATAGAATGCTTTCTGTGAAAAAAAAAAA]

[+] EMBL AK106915             [GCTAAATTTATTGTATTACCATTCTATAACTTTTGTCTAACACCCCTGGTTTAAAATTTTCATGTGGAACCTGCTATGGATTGGTTGGGATATTTTCATGAGATCTCTTCATCAAAGCATGATCTGTGCTGTTATTACAATATAAATGGTGCACGTTGCTCTTGTTTACACTTATCTGTGATTTGTTAATCTTCTGTTAAACAATTTGCTCCCTATGTTTGTCCTGCCCTGAAATCTGGACTTGTTTAGCACAAATGGTGCATTTTCTGAGACATGTGAATGGCTTTATCTCTAGGTCTATGGTTTAATTTGGCGTAGGTTGATTTTTGATTCTATACTTTTGTTTCCCTATCATTTGACGCTTTACACACAAAAAAAAAAACTTCACCGTTATTGACTGACTGGCATTGAATATGAAGCATCTAGCTGTAATAGTTTCTCAGCCATTAGTATGGTTACGAGTTGTTATGCCATACTGATTGTATTTATCCTTTTTTTCCTGGAGTGGGCAAGGGAAGCTGTTTTTGTTTTTATTCATCCTCAGTAAAAATTTTCATCTAGATCAGATTATGTTTCCTTTGTTTGCAAGTGATGTTTAAAAGAGAAAAAAAAATAACATGTGGGGGCTAAATCAGTGAACAATATAAAATTTTTCATGAAATGCTGGTGAAAAGCAGATAAGGTGTGGCTTGAGCATAGTAAGTTTTGACCTATAGTGAGGCTGTACAAATCTTCTGATGTCAATCATCTTGATAATGATAAATGCATGAGTTCTTGCGCTTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGCCGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTCTTCAGCGGGTTCAACGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGCGCAGTGGCGACGGCGTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGGGCCTTCAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACCATGTTCCAGGGGCTGGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTCCTCTGCCTGACCAACAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCGGGGGACGCCGGCCACAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAGTCCTACTTCAAGAACCACGTCAAGACGGTGCTGACGAGGGTGAACACCCTGACGGGCGTGGCGTACAAGGACGACCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTACGCCGACCCAACCGGCGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGAGCGTCGACGGCCGGCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCGAGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCACGCACCGCACCGCCGCCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTCCAGCGCCGACGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTGACGCCACGGCGGCGTACCTCGGCATGCCGCTTCT CGTCACCG AGTACGGCAAGTTCCTCTGGAAGGAGGTCGGCGCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCCATCTACGCC TCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTGCTCGACGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTCAATGGCCAGGACGCGGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTAAGCAACTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTGGCTTGTTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTTTTGTGATTTGTTCCATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACATGTTGCAACTGTAACTAGGACAAATTTTCAGGATTTGTTCAAGA                                                                       ]
[+] EMBL AU100620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACATTGAC CCACGNCGGCTTACTTCGGCATGCCGCTNCTNCGTCACCGAAGTACGGCAAGTTCCTCTGGAAGGAGGTCGGCCCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCCATCTACGCCTTCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTGCTCGACGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTCAATGGCCAGGACGCGGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTAGGCAACTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTGGCTTGTTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTTTTGTGATTTGTTCCATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACATGTTGCAACTGTAACTAGGACAAATTTTCAGGATTTGTTCAAGATGATTGTCCTAATGTTTTGTACCGTNGTTTTCTTGTAGACTATATAGAATGCTTTCTGTGAAAAAAAAAAA]


>consensus_7713#0 GCTAAATTTATTGTATTACCATTCTATAACTTTTGTCTAACACCCCTGGTTTAAAATTTT CATGTGGAACCTGCTATGGATTGGTTGGGATATTTTCATGAGATCTCTTCATCAAAGCAT GATCTGTGCTGTTATTACAATATAAATGGTGCACGTTGCTCTTGTTTACACTTATCTGTG ATTTGTTAATCTTCTGTTAAACAATTTGCTCCCTATGTTTGTCCTGCCCTGAAATCTGGA CTTGTTTAGCACAAATGGTGCATTTTCTGAGACATGTGAATGGCTTTATCTCTAGGTCTA TGGTTTAATTTGGCGTAGGTTGATTTTTGATTCTATACTTTTGTTTCCCTATCATTTGAC GCTTTACACACAAAAAAAAAAACTTCACCGTTATTGACTGACTGGCATTGAATATGAAGC ATCTAGCTGTAATAGTTTCTCAGCCATTAGTATGGTTACGAGTTGTTATGCCATACTGAT TGTATTTATCCTTTTTTTCCTGGAGTGGGCAAGGGAAGCTGTTTTTGTTTTTATTCATCC TCAGTAAAAATTTTCATCTAGATCAGATTATGTTTCCTTTGTTTGCAAGTGATGTTTAAA AGAGAAAAAAAAATAACATGTGGGGGCTAAATCAGTGAACAATATAAAATTTTTCATGAA ATGCTGGTGAAAAGCAGATAAGGTGTGGCTTGAGCATAGTAAGTTTTGACCTATAGTGAG GCTGTACAAATCTTCTGATGTCAATCATCTTGATAATGATAAATGCATGAGTTCTTGCGC TTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGC CGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTCTTCAGCGGGTTCAA CGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGCGCAGTGGCGACGGC GTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGGGCCTTCAGCGACGG CGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACCATGTTCCAGGGGCT GGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTCCTCTGCCTGACCAA CAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCGGGGGACGCCGGCCA CAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAGTCCTACTTCAAGAA CCACGTCAAGACGGTGCTGACGAGGGTGAACACCCTGACGGGCGTGGCGTACAAGGACGA CCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTACGCCGACCCAACCGG CGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGAGCGTCGACGGCCG GCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCGAGCACGAGAGCAAGGA GCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCACGCACCGCACCGCCGC CGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTCCAGCGCCGA CGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTGACGCCACGGCGGCGTA CCTCGGCATGCCGCTTCTCGTCACCGAGTACGGCAAGTTCCTCTGGAAGGAGGTCGGCGC CAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCCATCTACGCCTCGGC ATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTGCTCGACGGTGACAT CGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCG CGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTCAATGGCCAGGACGC GGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTAAGCAACTCGCTTAG CTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTGGCTTGTTTCGTCTC TTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTTTTGTGATTTGTTCC ATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACATGTTGCAACTGTAACTAGGAC AAATTTTCAGGATTTGTTCAAGATGATTGTCCTAATGTTTTGTACCGTNGTTTTCTTGTA GACTATATAGAATGCTTTCTGTGAAAAAAAAAAA



consensusID : consensus_7713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1542
fasta sequence
                              [GGTGGGCGTGGACGGGACGCAGTTCGTGGTGGAGGGCGGCAGGACGATCTACTTCAGCGGGTTCAACGCGTACTGGCTGATGATGATGGCGTCCGACCCGGCGCGCCGCGCCGCCGTCGTCGCCGCGTTCGCCCAGGCGTCATCGCGCGGCCTCAACCTCGCCCGGACCTGGGCCTTCAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACGACGAGGCCATGTTCCAGGGGCTGGACTTTGTGATCGCCGAGGCGAGACGACATGGCATATACCTTCTCCTCTGCCTCACCAACAACTTCGACGATTTCGGCGGCAAGCGTCAGTACGTCCGGTGGGCGGCCGACGCCGGCCACAACCTCACCGCCGGCGACGACTTCTTCACCAGCTCCGTCGTCAAATCCTACTACAAGAACCACGTCAAGGTACGTCACAATCGATATATACATACATCGATATACTAGATGTTAAAGAGCTGGAGCTCGATCTCTCGTGCAGGCGGTGCTGACGAGGGTGAACACGGTGACGGGGGTGGCGTACAAGGATGATCCGACGATCTTCGCGTGGGAGCTCATGAACGAGCCGCGGTGCGACGCCGACCCGACGGGCGGCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGCGCGTCGACGGCGGCCGCCACCTGGTGACGGCCGGGCTGGAGGGGTTCTACGGCGACGGCGAGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTGGCCACGCACCGCGCCGCCGGCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTCCACCGCCGACGAGCAGGCCGCCTTCTTCCGCAACTGGACGCGCTCCCACGTCCACGACACGGCGGCGTTCCTCGGCAAGCCGCTGCCCGTCACCGAGCACGGCAAGTTCCTCTGGAAGGGCGGCGGCGCCAACAAGACGCAGAGGAACTACTTCCTCGACGTGGTGCTCGACGCCATCTACGCCTCGGCGTCGCGCGGCGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTCCTCGACGACGACGTCGTCGCCGGCATGGACGACCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCCGAGCAGCTGGCCAGCCTCAACGGCCAGGACGCGGAGGCGCTTCGCCGCCGCCGCCGGCGGCCGGCGAGCTCGCACCGGAAGACGCGTCTTGGCAGCGGCGGCGACAGCGACGCACTCCGACTCCCCCGAACGCTCTTGATTCGCTTCATCTCTTTGTCTAGATCGATCTCTTCATTTATTCAAGACAATTTTGTTCTTTTCTAGTTTGTATATAGCTTGCATCCTTCTCCTTAGGTATAGTTGTTCGTTGGCACATCTTGCAACTGTAACCTGTCGAAATCATCAGGAACGCTTCAGGATGGCTGTTCTGACGATGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTT]

[+] EMBL AK107037             [GGTGGGCGTGGACGGGACGCAGTTCGTGGTGGAGGGCGGCAGGACGATCTACTTCAGCGGGTTCAACGCGTACTGGCTGATGATGATGGCGTCCGACCCGGCGCGCCGCGCCGCCGTCGTCGCCGCGTTCGCCCAGGCGTCATCGCGCGGCCTCAACCTCGCCCGGACCTGGGCCTTCAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACGACGAGGCCATGTTCCAGGGGCTGGACTTTGTGATCGCCGAGGCGAGACGACATGGCATATACCTTCTCCTCTGCCTCACCAACAACTTCGACGATTTCGGCGGCAAGCGTCAGTACGTCCGGTGGGCGGCCGACGCCGGCCACAACCTCACCGCCGGCGACGACTTCTTCACCAGCTCCGTCGTCAAATCCTACTACAAGAACCACGTCAAGGTACGTCACAATCGATATATACATACATCGATATACTAGATGTTAAAGAGCTGGAGCTCGATCTCTCGTGCAGGCGGTGCTGACGAGGGTGAACACGGTGACGGGGGTGGCGTACAAGGATGATCCGACGATCTTCGCGTGGGAGCTCATGAACGAGCCGCGGTGCGACGCCGACCCGACGGGCGGCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGCGCGTCGACGGCGGCCGCCACCTGGTGACGGCCGGGCTGGAGGGGTTCTACGGCGACGGCGAGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTGGCCACGCACCGCGCCGCCGGCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTCCACCGCCGACGAGCAGGCCGCCTTCTTCCGCAACTGGACGCGCTCCCACGTCCACGACACGGCGGCGTTCCTCGGCAAGCCGCTGCCCGTCACCGAGCACGGCAAGTTCCTCTGGAAGGGCGGCGGCGCCAACAAGACGCAGAGGAACTACTTCCTCGACGTGGTGCTCGACGCCATCTACGCCTCGGCGTCGCGCGGCGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTCCTCGACGACGACGTCGTCGCCGGCATGGACGACCTCAGGGACGGGTACGAGATCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCCGAGCAGCTGGCCAGCCTCAACGGCCAGGACGCGGAGGCGCTTCGCCGCCGCCGCCGGCGGCCGGCGAGCTCGCACCGGAAGACGCGTCTTGGCAGCGGCGGCGACAGCGACGCACTCCGACTCCCCCGAACGCTCTTGATTCGCTTCATCTCTTTGTCTAGATCGATCTCTTCATTTATTCAAGACAATTTTGTTCTTTTCTAGTTTGTATATAGCTTGCATCCTTCTCCTTAGGTATAGTTGTTCGTTGGCACATCTTGCAACTGTAACCTGTCGAAATCATCAGGAACGCTTCAGGATGGCTGTTCTGACGATGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTT]


>consensus_7713#1 GGTGGGCGTGGACGGGACGCAGTTCGTGGTGGAGGGCGGCAGGACGATCTACTTCAGCGG GTTCAACGCGTACTGGCTGATGATGATGGCGTCCGACCCGGCGCGCCGCGCCGCCGTCGT CGCCGCGTTCGCCCAGGCGTCATCGCGCGGCCTCAACCTCGCCCGGACCTGGGCCTTCAG CGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACGACGAGGCCATGTTCCA GGGGCTGGACTTTGTGATCGCCGAGGCGAGACGACATGGCATATACCTTCTCCTCTGCCT CACCAACAACTTCGACGATTTCGGCGGCAAGCGTCAGTACGTCCGGTGGGCGGCCGACGC CGGCCACAACCTCACCGCCGGCGACGACTTCTTCACCAGCTCCGTCGTCAAATCCTACTA CAAGAACCACGTCAAGGTACGTCACAATCGATATATACATACATCGATATACTAGATGTT AAAGAGCTGGAGCTCGATCTCTCGTGCAGGCGGTGCTGACGAGGGTGAACACGGTGACGG GGGTGGCGTACAAGGATGATCCGACGATCTTCGCGTGGGAGCTCATGAACGAGCCGCGGT GCGACGCCGACCCGACGGGCGGCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACG TGAAGCGCGTCGACGGCGGCCGCCACCTGGTGACGGCCGGGCTGGAGGGGTTCTACGGCG ACGGCGAGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACG TGGCCACGCACCGCGCCGCCGGCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCT GGCTATGGGGCTCCACCGCCGACGAGCAGGCCGCCTTCTTCCGCAACTGGACGCGCTCCC ACGTCCACGACACGGCGGCGTTCCTCGGCAAGCCGCTGCCCGTCACCGAGCACGGCAAGT TCCTCTGGAAGGGCGGCGGCGCCAACAAGACGCAGAGGAACTACTTCCTCGACGTGGTGC TCGACGCCATCTACGCCTCGGCGTCGCGCGGCGGCCCGCTCGTCGGCGGCGCGTTCTGGC AGCTGCTCCTCGACGACGACGTCGTCGCCGGCATGGACGACCTCAGGGACGGGTACGAGA TCATACTCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCCGAGCAGCTGG CCAGCCTCAACGGCCAGGACGCGGAGGCGCTTCGCCGCCGCCGCCGGCGGCCGGCGAGCT CGCACCGGAAGACGCGTCTTGGCAGCGGCGGCGACAGCGACGCACTCCGACTCCCCCGAA CGCTCTTGATTCGCTTCATCTCTTTGTCTAGATCGATCTCTTCATTTATTCAAGACAATT TTGTTCTTTTCTAGTTTGTATATAGCTTGCATCCTTCTCCTTAGGTATAGTTGTTCGTTG GCACATCTTGCAACTGTAACCTGTCGAAATCATCAGGAACGCTTCAGGATGGCTGTTCTG ACGATGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTT



consensusID : consensus_7713#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence
                              [CCCGTNTCCACCCAACTGAACTTGACTTGCGCCGCCGCCGNCGNGNGGAAGCCTCCGAATAAACTCGCAGCCGCGGGGCCTCTCCGGCGATNCTCGGGGCTGCCCAGGNAGGATACTAGGGGCGGATTTCGAGGGCGACACGGGGGGTGTCGCTTGCTCCGGTCCGAGTCCGACGCTGCTGAGCCATCCACGGACCTCAACCCTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGCCGT]

[+] EMBL OSC102801            [CCCGTNTCCACCCAACTGAACTTGACTTGCGCCGCCGCCGNCGNGNGGAAGCCTCCGAATAAACTCGCAGCCGCGGGGCCTCTCCGGCGATNCTCGGGGCTGCCCAGGNAGGATACTAGGGGCGGATTTCGAGGGCGACACGGGGGGTGTCGCTTGCTCCGGTCCGAGTCCGACGCTGCTGAGCCATCCACGGACCTCAACCCTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGCCGT]


>consensus_7713#2 CCCGTNTCCACCCAACTGAACTTGACTTGCGCCGCCGCCGNCGNGNGGAAGCCTCCGAAT AAACTCGCAGCCGCGGGGCCTCTCCGGCGATNCTCGGGGCTGCCCAGGNAGGATACTAGG GGCGGATTTCGAGGGCGACACGGGGGGTGTCGCTTGCTCCGGTCCGAGTCCGACGCTGCT GAGCCATCCACGGACCTCAACCCTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGC GCCTGGCGATGGCATGGTGGCCGT



consensusID : consensus_7713#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 122
fasta sequence
                              [CAAGAAGGCGAGACAAGGGGATCATCAGGGACGCCTCAAGATCGCTGTTCTGACGACGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTTTGCAACGGTTACTACGATGGAGTACCAT]

[+] EMBL CA766071             [CAAGAAGGCGAGACAAGGGGATCATCAGGGACGCCTCAAGATCGCTGTTCTGACGACGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTTTGCAACGGTTACTACGATGGAGTACCAT]


>consensus_7713#3 CAAGAAGGCGAGACAAGGGGATCATCAGGGACGCCTCAAGATCGCTGTTCTGACGACGTA TGTTTTGTACCATAGTTTCCTGTATAAGGTGTTTTGCAACGGTTACTACGATGGAGTACC AT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7713#0      GCTAAATTTATTGTATTACCATTCTATAACTTTTGTCTAACACCCCTGGTTTAAAATTTT 60
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CATGTGGAACCTGCTATGGATTGGTTGGGATATTTTCATGAGATCTCTTCATCAAAGCAT 120
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GATCTGTGCTGTTATTACAATATAAATGGTGCACGTTGCTCTTGTTTACACTTATCTGTG 180
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ATTTGTTAATCTTCTGTTAAACAATTTGCTCCCTATGTTTGTCCTGCCCTGAAATCTGGA 240
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CTTGTTTAGCACAAATGGTGCATTTTCTGAGACATGTGAATGGCTTTATCTCTAGGTCTA 300
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TGGTTTAATTTGGCGTAGGTTGATTTTTGATTCTATACTTTTGTTTCCCTATCATTTGAC 360
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GCTTTACACACAAAAAAAAAAACTTCACCGTTATTGACTGACTGGCATTGAATATGAAGC 420
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ATCTAGCTGTAATAGTTTCTCAGCCATTAGTATGGTTACGAGTTGTTATGCCATACTGAT 480
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TGTATTTATCCTTTTTTTCCTGGAGTGGGCAAGGGAAGCTGTTTTTGTTTTTATTCATCC 540
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TCAGTAAAAATTTTCATCTAGATCAGATTATGTTTCCTTTGTTTGCAAGTGATGTTTAAA 600
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      AGAGAAAAAAAAATAACATGTGGGGGCTAAATCAGTGAACAATATAAAATTTTTCATGAA 660
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ATGCTGGTGAAAAGCAGATAAGGTGTGGCTTGAGCATAGTAAGTTTTGACCTATAGTGAG 720
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GCTGTACAAATCTTCTGATGTCAATCATCTTGATAATGATAAATGCATGAGTTCTTGCGC 780
consensus_7713#1      ------------------------------------------------------------
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGGCATGGTGGC 840
consensus_7713#1      ------------------------------------------------------GGTGGG 6
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTCTTCAGCGGGTTCAA 900
consensus_7713#1      CGTGGACGGGACGCAGTTCGTGGTGGAGGGCGGCAGGACGATCTACTTCAGCGGGTTCAA 66
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGCGCAGTGGCGACGGC 960
consensus_7713#1      CGCGTACTGGCTGATGATGATGGCGTCCGACCCGGCGCGCCGCGCCGCCGTCGTCGCCGC 126
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGGGCCTTCAGCGACGG 1020
consensus_7713#1      GTTCGCCCAGGCGTCATCGCGCGGCCTCAACCTCGCCCGGACCTGGGCCTTCAGCGACGG 186
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACCATGTTCCAGGGGCT 1080
consensus_7713#1      CGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACGACGAGGCCATGTTCCAGGGGCT 246
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTCCTCTGCCTGACCAA 1140
consensus_7713#1      GGACTTTGTGATCGCCGAGGCGAGACGACATGGCATATACCTTCTCCTCTGCCTCACCAA 306
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCGGGGGACGCCGGCCA 1200
consensus_7713#1      CAACTTCGACGATTTCGGCGGCAAGCGTCAGTACGTCCGGTGGGCGGCCGACGCCGGCCA 366
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAGTCCTACTTCAAGAA 1260
consensus_7713#1      CAACCTCACCGCCGGCGACGACTTCTTCACCAGCTCCGTCGTCAAATCCTACTACAAGAA 426
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CCACGTCAAGA------------------------------------------------- 1271
consensus_7713#1      CCACGTCAAGGTACGTCACAATCGATATATACATACATCGATATACTAGATGTTAAAGAG 486
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ------------------------CGGTGCTGACGAGGGTGAACACCCTGACGGGCGTGG 1307
consensus_7713#1      CTGGAGCTCGATCTCTCGTGCAGGCGGTGCTGACGAGGGTGAACACGGTGACGGGGGTGG 546
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CGTACAAGGACGACCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTACG 1367
consensus_7713#1      CGTACAAGGATGATCCGACGATCTTCGCGTGGGAGCTCATGAACGAGCCGCGGTGCGACG 606
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CCGACCCAACCGGCGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGA 1427
consensus_7713#1      CCGACCCGACGGGCGGCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGC 666
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GCGTCGACGGC---CGGCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCG 1484
consensus_7713#1      GCGTCGACGGCGGCCGCCACCTGGTGACGGCCGGGCTGGAGGGGTTCTACGGCGACGGCG 726
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      AGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCA 1544
consensus_7713#1      AGCACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTGGCCA 786
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CGCACCGCACCGCCGCCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTAT 1604
consensus_7713#1      CGCACCGCGCCGCCGGCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTAT 846
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GGGGCTCCAGCGCCGACGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTG 1664
consensus_7713#1      GGGGCTCCACCGCCGACGAGCAGGCCGCCTTCTTCCGCAACTGGACGCGCTCCCACGTCC 906
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ACGCCACGGCGGCGTACCTCGGCATGCCGCTTCTCGTCACCGAGTACGGCAAGTTCCTCT 1724
consensus_7713#1      ACGACACGGCGGCGTTCCTCGGCAAGCCGCTGCCCGTCACCGAGCACGGCAAGTTCCTCT 966
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GGAAGGAGGTCGGCGCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACG 1784
consensus_7713#1      GGAAGGGCGGCGGCGCCAACAAGACGCAGAGGAACTACTTCCTCGACGTGGTGCTCGACG 1026
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CCATCTACGCCTCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGC 1844
consensus_7713#1      CCATCTACGCCTCGGCGTCGCGCGGCGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGC 1086
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TGCTCGACGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATAC 1904
consensus_7713#1      TCCTCGACGACGACGTCGTCGCCGGCATGGACGACCTCAGGGACGGGTACGAGATCATAC 1146
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCC 1964
consensus_7713#1      TCGCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCCGAGCAGCTGGCCAGCC 1206
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TCAATGGCCAGGACGCGGATGTGCTTTGCCGCCGG-GCAAGCTCTCACCGGAGGACGCGT 2023
consensus_7713#1      TCAACGGCCAGGACGCGGAGGCGCTTCGCCGCCGCCGCCGGCGGCCGGCG-AGCTCGCAC 1265
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CTAAGCAACTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTC 2083
consensus_7713#1      CGGAAGACGCGTCTTGGCAGCGGCGGCGACAGCGACGCACTCCGACTCCCCCGAACGCTC 1325
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      ----------CCCGTNTCCACCCAACTGAACTTGACTTGCGCCGCCGCCGNCGNGNGGAA 50
                                                                                  

consensus_7713#0      TTGGCTTGTTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATT 2143
consensus_7713#1      TTGATTCGCTTCATCTCTTTGTCTAGATCGATCTCTTCATTTATTCAAGACAATTTTGTT 1385
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      GCC-TCCGAATAAACTCGCAGCCGCGG--GGCCTCTCCGGCGATNCTCGGGGCTGCCCAG 107
                                                                                  

consensus_7713#0      CTTTTGTGATTTGTTC----CATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACA 2199
consensus_7713#1      CTTTTCTAGTTTGTATATAGCTTGCATCCTTCTCCTTAGGTATAGTTGTTCGTTGGCACA 1445
consensus_7713#3      ------------------------------------------------------------
consensus_7713#2      GNAGGATACTAGGGGCGGATTTCGAGGGCGACACGGGGGGTGTCGCTTGCTCCGGTCCGA 167
                                                                                  

consensus_7713#0      TGTTGCAACTG-TAACTAGGACA-AATTTTCAGGATTTGTTCAA-GATGATTGTCCTAAT 2256
consensus_7713#1      TCTTGCAACTG-TAACCTGTCGA-AATCATCAGGAACGCTTCAG-GATGGCTGTTCTGAC 1502
consensus_7713#3      ---CAAGAAGG-CGAGACAAGGG-GATCATCAGGGACGCCTCAA-GATCGCTGTTCTGAC 54
consensus_7713#2      GTCCGACGCTGCTGAGCCATCCACGGACCTCAACCCTAGTTCAAAGACCTCCACCCTGGC 227
                                *   *              ***        ***  **        **   

consensus_7713#0      GTTTTGTACCGTNGTTTTCTTGTAGACTATATAGAATGCTTTCTGTGAAAAAAAAAAA-- 2314
consensus_7713#1      GATGTATGTT-TTGTACCATAGTTTCCTGTATAAGGTGTTT------------------- 1542
consensus_7713#3      GACGTATGTT-TTGTACCATAGTTTCCTGTATAAGGTGTTTTGCAACGGTTACTACGATG 113
consensus_7713#2      G-CGC-TGCCGTGGCGCCTGGCGATGGCATGGTGGCCGT--------------------- 264
                      *     *    * *               *       *                      

consensus_7713#0      ---------
consensus_7713#1      ---------
consensus_7713#3      GAGTACCAT 122
consensus_7713#2      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)