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Oryza sativa
cluster # 7760 cluster # 7760       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7760#0 length = 1268 sequences # 4  
consensus_7760#1 length = 564 sequences # 1  

consensusID : consensus_7760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1268
fasta sequence
                              [GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT-GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG]

[+] EMBL CB684235             [GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA752726             [              TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT   CCAGTTCTGGCATAATATAACCAATTTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA752722             [              TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAA TT  CCCAGTTCTGGCATAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA765057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTGTTANC TGAAGCCATG TGCTTCCCACAANCTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGGATANCCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGNCTGCATGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG]


>consensus_7760#0 GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACT GACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAA CATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATG GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT CCACATTTCAAATTTGCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTT GAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTG TGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTT GTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGA TAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTC TTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTC AAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTG CAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAA ATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAAT ATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCT GTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCG TAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTC CCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCAT AAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCT TGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATA AAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGT AATGAAAG



consensusID : consensus_7760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence
                              [TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT]

[+] EMBL CB674602             [TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT]


>consensus_7760#1 TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTA CACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGA CACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACT GGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTG TTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGT GAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTG GTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGC TCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGC TTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATG TCATTAAGTGACTGCAAGAACACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7760#0      GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACT 60
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      GACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAA 120
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      CATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATG 180
consensus_7760#1      ------------------------------------------------TCTTTTTTTTTG 12
                                                                             *  **

consensus_7760#0      GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 240
consensus_7760#1      GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 72
                      ************************************************************

consensus_7760#0      AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 300
consensus_7760#1      AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 132
                      ************************************************************

consensus_7760#0      CCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 358
consensus_7760#1      CCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 192
                      ***************  *  ****************************************

consensus_7760#0      TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 418
consensus_7760#1      TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 252
                      ************************************************************

consensus_7760#0      TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 478
consensus_7760#1      TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 312
                      ************************************************************

consensus_7760#0      TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 538
consensus_7760#1      TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 372
                      ************************************************************

consensus_7760#0      GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 598
consensus_7760#1      GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 432
                      ************************************************************

consensus_7760#0      TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 658
consensus_7760#1      TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 492
                      ************************************************************

consensus_7760#0      TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 718
consensus_7760#1      TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 552
                      ************************************************************

consensus_7760#0      TGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTG 778
consensus_7760#1      TGCAAGAACACT------------------------------------------------ 564
                      ************                                                

consensus_7760#0      AAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATA 838
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      ATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCAT 898
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      CTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTC 958
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      CGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCC 1018
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      TCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCC 1078
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      ATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGC 1138
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      CTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGA 1198
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      TAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGA 1258
consensus_7760#1      ------------------------------------------------------------
                                                                                  

consensus_7760#0      GTAATGAAAG 1268
consensus_7760#1      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)