These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1268 fasta sequence [GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT-GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG] [+] EMBL CB684235 [GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCT GGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCA ] [-] EMBL CA752726 [ TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTT CCAGTTCTGGCATAATATAACCAATTTACT ] [-] EMBL CA752722 [ TAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACTGACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAACATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAA TT CCCAGTTCTGGCATAATAT ] [-] EMBL CA765057 [ CTTGTTANC TGAAGCCATG TGCTTCCCACAANCTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGGATANCCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGNCTGCATGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTGAAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATAATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCATCTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTCCGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCCTCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCCATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGCCTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGATAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGAGTAATGAAAG] consensusID : consensus_7760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT] [+] EMBL CB674602 [TCTTTTTTTTTGGTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGAAGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACATCCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATGTTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTTTGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATCTTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTTGATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACCTCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATGTCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGACTGCAAGAACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7760#0 GCATCACAACCATCTAAAGCAAACTTGTTTCATTATCATTTTTTTCAGTCACTTTCTACT 60 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 GACTGCTATTGTACACATGTCCCAGAAAAACTAGGGAAATTTTAAACAAATGGTTCATAA 120 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CATATGTATATAAAGCAACAGGAAAACCACTACCACATATCCCAGAAGAACAAGCTAATG 180 consensus_7760#1 ------------------------------------------------TCTTTTTTTTTG 12 * ** consensus_7760#0 GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 240 consensus_7760#1 GTATCACATTCTAATGTTTAATTTCACCATTTAGATCAATGGAAATTACACATGCACGGA 72 ************************************************************ consensus_7760#0 AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 300 consensus_7760#1 AGTTGTATGTTTTGTTTCTCAAAGAGTGGCAGCTAAAGAATGTAAGGACACAATATACAT 132 ************************************************************ consensus_7760#0 CCACATTTCAAATTT--GCCAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 358 consensus_7760#1 CCACATTTCAAATTTTAGGAAGTTCTGGCATAATATAACCAATTTACTGGAGTTATTATG 192 *************** * **************************************** consensus_7760#0 TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 418 consensus_7760#1 TTGAGCTAAACATTCACGCCTTCAGATTGTGCTGGACTATCTGACTTGTTTTTTGCACTT 252 ************************************************************ consensus_7760#0 TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 478 consensus_7760#1 TGTGTTGCTACATCACCCTCACTGTCAGGAAAAACTTCTGGCTGCAGTGAAGGTGCAATC 312 ************************************************************ consensus_7760#0 TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 538 consensus_7760#1 TTGTTAACTTGAAGCCATGTTGCTTCCCACAAACTGTTCTCTTCACTGGTGCTTGTCTTT 372 ************************************************************ consensus_7760#0 GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 598 consensus_7760#1 GATAAAACCCGATTTGCTTTTAGCACCAGCAGTATGTTCTTCAGTAGCTCTGGGATAACC 432 ************************************************************ consensus_7760#0 TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 658 consensus_7760#1 TCTTGTAGCTTCTCAGTCCTCCTCCCTCTCACTTTGACTTTCATAAGCTTCTCTATCATG 492 ************************************************************ consensus_7760#0 TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 718 consensus_7760#1 TCAAGTACTTCCAACCACAGCTTACTGAAGCTGCTCTGTGATGAAATGTCATTAAGTGAC 552 ************************************************************ consensus_7760#0 TGCAAGAACACTTTGCATAGAAGTTTTACAGCATGCAAGAGGGACACCTCCATGTTTCTG 778 consensus_7760#1 TGCAAGAACACT------------------------------------------------ 564 ************ consensus_7760#0 AAATCCTTCGGTGAGTAATTTTGTGCAATCTCCAGTAATTCATCAAGCAACTGGAAAATA 838 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 ATATCAAATGACATCAACCATGCTGAAGATGGCACTGATATCCCATCAACTACTAAGCAT 898 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CTGTGCAATGATAATAGCGCATGATTCCTTACTTCCTCCCTCTGGTCTGTGCACACCTTC 958 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CGTAGTGCCTGCACTAGTCGCAGCCACATCTCAGCAATTCCTTCCAATATCCTGTCAGCC 1018 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 TCCCCACCAGCTTCCTTAACCTCACGTGACCAGCGTGTAAGACAATTCACTGATTCTGCC 1078 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 ATAAGGTTCAAAGCATGGATAGATCTTTCTGCAGAGCCAAGCCGAGACTCTGCAAACTGC 1138 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CTTGAGGCCTCCACAGAAAGGACAAAGTTAGCAGGGGAGAGGTGTGCTCCCTCAGACAGA 1198 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 TAAAAACTAGGGCTTCAAAACCAACGTCAGAAGCATCTGGATGACGAGCAGTGATGCAGA 1258 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 GTAATGAAAG 1268 consensus_7760#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||