These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAANAANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNNCTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNTTCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCTCTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTCCTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTTTCTNTTNCCTTCTTCTCTTCTCTCTTN] [+] EMBL BE229241 [CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAANAANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNNCTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNTTCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCTCTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTCCTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTTTCTNTTNCCTTCTTCTCTTCTCTCTTN] consensusID : consensus_7761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 483 fasta sequence [AAGATTTTTATCACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA-GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG] [+] EMBL CB684862 [AAGATTTTTATCACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAAAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAG ] [+] EMBL BI306181 [AAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAG ] [-] EMBL CB684861 [ AGGTACATGTAGGATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG] [-] EMBL AK107851 [ ACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7761#0 CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTT 60 consensus_7761#1 ---------------------------------------AAGATTTTTATCACGAACTTT 21 *********** ********* consensus_7761#0 AGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAG 120 consensus_7761#1 AGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAGATGTAATGTCACTCACTCAAG 81 ************************************** ********************* consensus_7761#0 CACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCA 180 consensus_7761#1 CACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCA 141 ************************************** ********************* consensus_7761#0 CACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCA 240 consensus_7761#1 CACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCA 201 ************************************************************ consensus_7761#0 TGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAG 300 consensus_7761#1 TGAGCTGCTCATCAAGCACTAATT-AATTCAGATATAATCAAATTAGCTAGCTTAATTAG 260 ************************ *********************************** consensus_7761#0 CTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAAN 360 consensus_7761#1 CTAGTTGCTGGAGCACTGGAAGCCATTGGG--GAGCTTCCTGCTG-CAGCGGTTGACGAG 317 ************** ****** ******** *** * ** * ** ** * ** * * consensus_7761#0 AANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNN 420 consensus_7761#1 GACGCTGAGCTGGAC----GTGCGGCTCGACGCCGACGAGG--CCGAGCACGTTGGCGCG 371 * ** * * ** * * * ** * * ** * * ** * consensus_7761#0 CTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNT 480 consensus_7761#1 CAG----CGCCGTGCAGAGGCACACGGCGGCGTCC--ACGTCGGCGAGGCCGGCGAGGAG 425 * * * * * * * *** *** ** consensus_7761#0 TCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCT 540 consensus_7761#1 CCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG-- 483 * * * * * * * * ** consensus_7761#0 CTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTC 600 consensus_7761#1 ------------------------------------------------------------ consensus_7761#0 CTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTT 660 consensus_7761#1 ------------------------------------------------------------ consensus_7761#0 TCTNTTNCCTTCTTCTCTTCTCTCTTN 687 consensus_7761#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||