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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1268 fasta sequence
[ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCTAGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTTCATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCATTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGATACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGGCTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAAAATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAAAAAAAAAA]
[+] EMBL AK061263 [ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCTAGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAG ]
[+] EMBL CB678951 [ TTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAA ]
[+] EMBL BI804595 [ TTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTTCATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCATTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGATACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGGCTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAAAATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAAAAAAAAAA]
consensusID : consensus_7775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAAAACTCG]
[-] EMBL CF324625 [CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAAAACTCG]
consensusID : consensus_7775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATAAAAAAAAAA]
[+] EMBL CA755954 [AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7775#0 ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCT 60
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 AGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCAC 120
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 AGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGA 180
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 CGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAG 240
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 GCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGT 300
consensus_7775#1 ----------------CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGT 44
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 GTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGC 360
consensus_7775#1 GTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGC 104
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 GCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCAT 420
consensus_7775#1 GCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCAT 164
consensus_7775#2 AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAA 60
* * ** * * *** * ** ** * * ** *
consensus_7775#0 GTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCG 480
consensus_7775#1 GTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCG 224
consensus_7775#2 TTTAAACGTT--GCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGT--TAGCTT 116
* ** *** * *** ** ** * * ** **
consensus_7775#0 GGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGA 540
consensus_7775#1 GGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGA 284
consensus_7775#2 GACGTTGGGGTTGCG---AAATCGCAACGAGA--AAGAAAAGCGTTACTTGTGAGTGTG- 170
* * * * *** *** ** ** * *** * * ***
consensus_7775#0 CGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGT 600
consensus_7775#1 CGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGT 344
consensus_7775#2 CGCGTTGAAATGTTATGCTACGATCGAAAGAAGC--GTGCGTCCTGGTGATCAA--GTGG 226
***** * * * ** * * ** * * ** * ***
consensus_7775#0 GGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAG 660
consensus_7775#1 GGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAG 404
consensus_7775#2 GAACCAGATTCCTTCCTAACTATCAATCATTTATTG--GTTATTATATCTATAATATAAA 284
* ** * ** * * * * *** * * * ** * * **
consensus_7775#0 AATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTT 720
consensus_7775#1 AATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAA- 463
consensus_7775#2 GATTGGTTTTCAAATAAAAAAAAAA----------------------------------- 309
**** ** * * ******
consensus_7775#0 AGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAAT 780
consensus_7775#1 AACTCG------------------------------------------------------ 469
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 CGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATC 840
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 GAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCA 900
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 TTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTT 960
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 CATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCA 1020
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 TTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGAT 1080
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 ACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGG 1140
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 CTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAA 1200
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 AATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAA 1260
consensus_7775#1 ------------------------------------------------------------
consensus_7775#2 ------------------------------------------------------------
consensus_7775#0 AAAAAAAA 1268
consensus_7775#1 --------
consensus_7775#2 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||