These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence [ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG-TCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT] [+] EMBL CA765636 [ACNCTCCACAAAAAAATT ACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGNCGNCGGAGACCGNCCATAGCCGGCAACGNCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGNTTCCTCCAAGTGCGANACGACCCGATCTGCATCCTCTACTGGTTCTTCGCTCNTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT] [+] EMBL AK058208 [ aCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCGACGTCCTCACCACCACCAGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCA GTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG TGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGtt ] [+] EMBL CA753221 [ AAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAA ] consensusID : consensus_7777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence [ATCCTCTACTG-GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA] [+] EMBL CB000757 [ATCCTCTACTG GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA] [+] EMBL CB001044 [ATCCTCTACTGAGGTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7777#0 ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGC 60 consensus_7777#1 ------------------------------------------------------------ consensus_7777#0 CGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCC 120 consensus_7777#1 ------------------------------------------------------------ consensus_7777#0 CCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGC 180 consensus_7777#1 ------------------------------------------------------------ consensus_7777#0 ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGC 240 consensus_7777#1 ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGC 60 ************************************************ *********** consensus_7777#0 TGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTT 300 consensus_7777#1 TGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTT 120 ***** *************** *************** ********************** consensus_7777#0 CCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 360 consensus_7777#1 CCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 180 ****************** ***************************************** consensus_7777#0 CAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANA 420 consensus_7777#1 CAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTT---AGA 237 ********* ***************************************** ** * * consensus_7777#0 TAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTG 480 consensus_7777#1 TAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG-TGATTGTAAATTTACTTTCCTG 296 ********** ** ****** **************** ****** ************** consensus_7777#0 CACTTCTAATACNGGNACATAGTGGTNTTTT-GNCCAGATTANNTGCTATGATGATAAAT 539 consensus_7777#1 CACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAAT 356 ************ ** ******** * **** * ******** * ** ** ** ***** consensus_7777#0 TGCTGCANTCTGAGTTACCTAGNT--GGCTACGGGNACTATAATTTNGTAGAT------- 590 consensus_7777#1 TGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTAT 416 ***** * ************** * * * * * *** * ***** consensus_7777#0 -------------------------------------------- consensus_7777#1 TTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA 460 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||