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Oryza sativa
cluster # 7841 cluster # 7841       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7841#0 length = 764 sequences # 2  
consensus_7841#1 length = 542 sequences # 3  

consensusID : consensus_7841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 764
fasta sequence
                              [CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN]

[+] EMBL CB656324             [CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN]
[+] EMBL CB656323             [                                                                                                                                                                                                                                                                                                                                                                                                         ATCACCTGCGGCGCACAAAGACGNTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGAATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATG                                                                 ]


>consensus_7841#0 CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAG TATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGT ATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAG CAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGC AAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTA CCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCAT CTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTA CCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATT TCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTG CAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTG GACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGA TTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGC CTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN



consensusID : consensus_7841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 542
fasta sequence
                              [TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG-TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA-TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG]

[-] EMBL AU095234             [TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCT                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BI807660             [                                                   ttttTAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG]
[-] EMBL CA764835             [                                                                                            TACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGGGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACG                                                                                                                                         ]


>consensus_7841#1 TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATG GCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCT CAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT TCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT GAATAACAGGATTCTTGTGTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGAT TTATTGCTTCCTCTGTCCTTTAAATATGCAGCTTTACCAATCACGTGCCTCTTCCCCTTC CTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTG AGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTT GG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7841#0      ------------------------------------------------------------
consensus_7841#1      TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATG 60
                                                                                  

consensus_7841#0      -----------------------------------CCTTTTATTTTTTT---TTGAAGCT 22
consensus_7841#1      GCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCT 120
                                                            *  *     **   ********

consensus_7841#0      CAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 82
consensus_7841#1      CAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 180
                      ******************* ****************************************

consensus_7841#0      TCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 142
consensus_7841#1      TCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 240
                      ************* **********************************************

consensus_7841#0      AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 202
consensus_7841#1      AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 300
                      ************************************************************

consensus_7841#0      GAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 262
consensus_7841#1      GAATAACAGGATTCTTGTGTT-GTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 359
                      ********************* **************************************

consensus_7841#0      TTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCT 322
consensus_7841#1      TTTATTGCTTCCTCTGTCCTTTAAATAT-GCAGCTTTACCAATCACGTGCCTCTTCCCCT 418
                      **************************** *******************************

consensus_7841#0      TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 382
consensus_7841#1      TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 478
                      ************************************************************

consensus_7841#0      TGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTT--GAAGGACACTGC 440
consensus_7841#1      TGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGT 538
                      ******************* **************************  *********** 

consensus_7841#0      TTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTC 500
consensus_7841#1      TTGG-------------------------------------------------------- 542
                      ** *                                                        

consensus_7841#0      ACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGAT 560
consensus_7841#1      ------------------------------------------------------------
                                                                                  

consensus_7841#0      ATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCT 620
consensus_7841#1      ------------------------------------------------------------
                                                                                  

consensus_7841#0      AAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAAC 680
consensus_7841#1      ------------------------------------------------------------
                                                                                  

consensus_7841#0      CATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTA 740
consensus_7841#1      ------------------------------------------------------------
                                                                                  

consensus_7841#0      TCAAGATCTCTACTGGTTCATTCN 764
consensus_7841#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)