These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence [CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN] [+] EMBL CB656324 [CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN] [+] EMBL CB656323 [ ATCACCTGCGGCGCACAAAGACGNTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGAATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATG ] consensusID : consensus_7841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence [TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG-TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA-TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG] [-] EMBL AU095234 [TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCT ] [-] EMBL BI807660 [ ttttTAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG] [-] EMBL CA764835 [ TACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGGGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7841#0 ------------------------------------------------------------ consensus_7841#1 TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATG 60 consensus_7841#0 -----------------------------------CCTTTTATTTTTTT---TTGAAGCT 22 consensus_7841#1 GCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCT 120 * * ** ******** consensus_7841#0 CAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 82 consensus_7841#1 CAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 180 ******************* **************************************** consensus_7841#0 TCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 142 consensus_7841#1 TCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 240 ************* ********************************************** consensus_7841#0 AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 202 consensus_7841#1 AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 300 ************************************************************ consensus_7841#0 GAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 262 consensus_7841#1 GAATAACAGGATTCTTGTGTT-GTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 359 ********************* ************************************** consensus_7841#0 TTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCT 322 consensus_7841#1 TTTATTGCTTCCTCTGTCCTTTAAATAT-GCAGCTTTACCAATCACGTGCCTCTTCCCCT 418 **************************** ******************************* consensus_7841#0 TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 382 consensus_7841#1 TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 478 ************************************************************ consensus_7841#0 TGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTT--GAAGGACACTGC 440 consensus_7841#1 TGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGT 538 ******************* ************************** *********** consensus_7841#0 TTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTC 500 consensus_7841#1 TTGG-------------------------------------------------------- 542 ** * consensus_7841#0 ACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGAT 560 consensus_7841#1 ------------------------------------------------------------ consensus_7841#0 ATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCT 620 consensus_7841#1 ------------------------------------------------------------ consensus_7841#0 AAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAAC 680 consensus_7841#1 ------------------------------------------------------------ consensus_7841#0 CATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTA 740 consensus_7841#1 ------------------------------------------------------------ consensus_7841#0 TCAAGATCTCTACTGGTTCATTCN 764 consensus_7841#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||