Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7863 cluster # 7863       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7863#0 length = 940 sequences # 5  
consensusID : consensus_7863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 940
fasta sequence 
                              [AAAGGTTTTGAAGCTTTAATGCCACCCTTTCTGTCCCTTAAAAAGCTTACCTCGCTCGCCCATTCTACTTCCATTCTCTTCACACCATCACATGTAGTGCGTGTACTCCTAGAGCTTAGCTAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTCGGTGGTGGTGAGTTCGTCGTCGCCTGCGGCGGCGATTGCCACGGCCGGCTGCGTGGTGGACACGAACACGACGTTCGTGCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTGCAGAAGCTGACGGGCGCGCCGGGGAGCGGCGGCAGCAAGCCGGCGCCGGCGGCGCCGGTGATGAGGAGGCCGAAGCTGCAGGAGAGGCGGCGCGCGGCGCCGGCGAGGCTGGAGCTCGCGCGGCCGCAGCCGCTGTACTACAGCCACCACCACCACAGGCTGATGCACTCGCCGGTGTCGCCCATGGACTACGCCTACGTGATGGCCTCCTCCTCCTCGTCGTCGTCGTCCTCGCTGCCGTCGTCGTCGTCCTCGCTGTCGCCGTCGCCGCCGGCGTCGTCGTCGTCGTGCGGGGTGGTGGTGATAACCAAGGAGGAGGAGGAGAGGGAGGAGAAGGCCATCGCCTCCAAGGGGTTCTACCTGCACTCGTCGCCGAGGAGCGGCGGCGCCGGCGACGGCGAGAGGCCCAAGCTGCTGCCGCTGTTCCCCGTCCACTCCCCCAGGAGCTCCTCCTTTGCCAGATCTTAATTTATTAATTAATCAGCCTTAATTATCTTGTTAATCCCGGCGATGCCATGCTTAATTAATCCTTTGTAGCACCAAGCTATCTATCTGTATTAATCAATTAGATGATCAATATATCAATCC]

[+] EMBL AU091690             [AAAGGTTTTGAAGCTTTAATGCCACCCTTTCTGTCCCTTAAAAAGCTTACCTCGCTCGCCCATTCTACTTCCATTCTCTTCACACCATCACATGTAGTGCGTGTACTCCTAGAGCTTAGCTAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTCGGTGGTGGTGAGTTCGTCGTCGCCTGCGGCGGCGATTGCCACGGCCGGCTGCGTGGTGGACACGAACACGACGTTCGTGCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTGCAGAAGCTGACGGGCGCGCCGGGGAGCGGCGGCAGCAAGCCGGCGCCGGCGGCGCCGGTGATGAGGAGGCCGAAGCTGCAGGAGAGGCGGCGCGCGGCGCCGGCGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C74142               [AAAGGTTTTGAAGCTTTAATGCCACCCTTTCTGTCCCTTAAAAAGCTTACCTCGCTCGCCCATTCTACTTCCATTCTCTTCACACCATCACATGTAGTGCGTGTACTCCTAGAGCTTAGCTAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTCGGTGGTGGTGAGTTCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK067139             [                                                                          TCTCTTCACACCATCACATGTAGTGCGTGTACTCCTAGAGCTTAGCTAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTCGGTGGTGGTGAGTTCGTCGTCGCCTGCGGCGGCGATTGCCACGGCCGGCTGCGTGGTGGACACGAACACGACGTTCGTGCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTGCAGAAGCTGACGGGCGCGCCGGGGAGCGGCGGCAGCAAGCCGGCGCCGGCGGCGCCGGTGATGAGGAGGCCGAAGCTGCAGGAGAGGCGACGCGCGGCGCCGGCGAGGCTGGAGCTCGCGCGGCCGCAGCCGCTGTACTACAGCCACCACCACCACAGGCTGATGCACTCGCCGGTGTCGCCCATGGACTACGCCTACGTGATGGCCTCCTCCTCCTCGTCGTCGTCGTCCTCGCTGCCGTCGTCGTCGTCCTCGCTGTCGCCGTCGCCGCCGGCGTCGTCGTCGTCGTGCGGGGTGGTGGTGATAACCAAGGAGGAGGAGGAGAGGGAGGAGAAGGCCATCGCCTCCAAGGGGTTCTACCTGCACTCGTCGCCGAGGAGCGGCGGCGCCGGCGACGGCGAGAGGCCCAAGCTGCTGCCGCTGTTCCCCGTCCACTCCCCCAGGAGCTCCTCCTTTGCCAGATCTTAATTTATTAATTAATCAGCCTTAATTATCTTGTTAATCCCGGCGATGCCATGCTTAATTAATCCTTTGTAGCACCAAGCTATCTATCTGTATTAATCAATTAGATGATCAATATATCAATCC]
[+] EMBL AU197318             [                                                                                                 TGCGTGTACTCCTAGAGCTTAGCTAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTCGGTGGTGGTGAGTTCGTCGTCGCCTGCGGCGGCGATTGCCACGGCCGGCTGCGTGGTGGACACGAACACGACGTTCGTGCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTGCAGAAGCTGACGGGCGCGCCGGGGAGCGGCGGCAGCAAGCCGGCGCCGGCGGCGCCGGTGATGAGGAGGCCGAAGCTGCAGGAGAGGCGGCGCGCGGCGCCGGCGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C73798               [                                                                                                 TGCGTGTNCNCCTAGAGCTTAGCTAGAGCNAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTGGTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCNGAGGTCGGTGGTGGTGAGTTCGTCGTCGCCTGCGGGGGCGATTGCNACGGCCGGCTGCGTGGTGGACACGAACACGACGTTCGTNCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTTCAGAAGCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_7863#0
AAAGGTTTTGAAGCTTTAATGCCACCCTTTCTGTCCCTTAAAAAGCTTACCTCGCTCGCC
CATTCTACTTCCATTCTCTTCACACCATCACATGTAGTGCGTGTACTCCTAGAGCTTAGC
TAGAGCTAGCTTCCTCTCGTTGATAGCTTGATACATCTCTCTCGATTCGTAGAGAGTTTG
GTTGGTTGATAGCTAGCTCGACGGCGCGGCCATGGCGGCGGCGTCTCATGCGCCGAGGTC
GGTGGTGGTGAGTTCGTCGTCGCCTGCGGCGGCGATTGCCACGGCCGGCTGCGTGGTGGA
CACGAACACGACGTTCGTGCAGGCCGACCCGGCGACGTTCCGGGCGCTCGTGCAGAAGCT
GACGGGCGCGCCGGGGAGCGGCGGCAGCAAGCCGGCGCCGGCGGCGCCGGTGATGAGGAG
GCCGAAGCTGCAGGAGAGGCGGCGCGCGGCGCCGGCGAGGCTGGAGCTCGCGCGGCCGCA
GCCGCTGTACTACAGCCACCACCACCACAGGCTGATGCACTCGCCGGTGTCGCCCATGGA
CTACGCCTACGTGATGGCCTCCTCCTCCTCGTCGTCGTCGTCCTCGCTGCCGTCGTCGTC
GTCCTCGCTGTCGCCGTCGCCGCCGGCGTCGTCGTCGTCGTGCGGGGTGGTGGTGATAAC
CAAGGAGGAGGAGGAGAGGGAGGAGAAGGCCATCGCCTCCAAGGGGTTCTACCTGCACTC
GTCGCCGAGGAGCGGCGGCGCCGGCGACGGCGAGAGGCCCAAGCTGCTGCCGCTGTTCCC
CGTCCACTCCCCCAGGAGCTCCTCCTTTGCCAGATCTTAATTTATTAATTAATCAGCCTT
AATTATCTTGTTAATCCCGGCGATGCCATGCTTAATTAATCCTTTGTAGCACCAAGCTAT
CTATCTGTATTAATCAATTAGATGATCAATATATCAATCC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)