These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence [GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG-GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGCTGG] [+] EMBL AK058228 [GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGCTGG] [+] EMBL AK099066 [ AGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGC ] [+] EMBL OSS15891A [ GAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGA CTNNNGNAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCGNGCGGCGGNGATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCTTNCTCAAG ] [+] EMBL CA755586 [ CAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATT CCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCNAAGTTAGTGCCCAATGGTTGCATCCC ACTTTGAAAT ] consensusID : consensus_7868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAAAAAAAAAAAAAA] [+] EMBL AU174095 [GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7868#0 GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGC 60 consensus_7868#1 ------------------------------------------------------------ consensus_7868#0 GCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGA 120 consensus_7868#1 ------------------------------------------------------------ consensus_7868#0 GTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTG 180 consensus_7868#1 ------------------------------------------------------------ consensus_7868#0 CCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCG 240 consensus_7868#1 ------------------------------------------------------------ consensus_7868#0 CCGGCGGCGGGATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCG 300 consensus_7868#1 -------------GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCG 47 *********************************************** consensus_7868#0 CGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCG 360 consensus_7868#1 CGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCG 107 ************************************************************ consensus_7868#0 TGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAA 420 consensus_7868#1 TGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAA 167 ************************************************************ consensus_7868#0 GGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGG 480 consensus_7868#1 GGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGG 227 ************************************************************ consensus_7868#0 TACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCC 540 consensus_7868#1 TACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCC 287 ************************************************************ consensus_7868#0 TCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGG 600 consensus_7868#1 TCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGG 347 ************************************************************ consensus_7868#0 GCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGG 660 consensus_7868#1 GCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGG 407 ************************************************************ consensus_7868#0 CATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACA 720 consensus_7868#1 CATTTGGACCCAAAAAAAAAAAAAAA---------------------------------- 433 ************** consensus_7868#0 CGAATAGTATTCAATAAGATGATGAGCTGG 750 consensus_7868#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||