These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG] [+] EMBL CB668762 [CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGA ] [-] EMBL CB668761 [ GTGCACGGTCATTCTCAGAAGTCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG] consensusID : consensus_7871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAATCCAAACTTTTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317497 [GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAATCCAAACTTTTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 192 fasta sequence [TTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT] [+] EMBL CF321252 [TTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT] [-] EMBL CF321251 [ TTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTTTTAATAACGAGTACGGTCCCATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7871#1 GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAAT 60 consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 -------CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTA 53 consensus_7871#1 CCAAACTTTTTCA-------TCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTG 113 consensus_7871#2 --------TTTCA-------TCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTG 45 consensus_7871#0 GGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTC 113 ** ** *** ** * * * * * ** ** * consensus_7871#1 GATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTA 173 consensus_7871#2 GATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTA 105 consensus_7871#0 GGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGT--ACGCTACACGATCTC 171 * * * * * * ** * * * * ** * * **** * * consensus_7871#1 ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 233 consensus_7871#2 ATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 165 consensus_7871#0 ATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAA 231 *** * * * * * ***** * * * ** consensus_7871#1 AAAAAA------------------------------------------------------ 239 consensus_7871#2 CCCCTGTCATGCCGTTACGTACCGTAT--------------------------------- 192 consensus_7871#0 GTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGC 291 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 GACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCG 351 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATC 411 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACC 471 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 AGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCG 531 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 GCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAG 591 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTG 651 consensus_7871#1 ------------------------------------------------------------ consensus_7871#2 ------------------------------------------------------------ consensus_7871#0 CTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGG 711 consensus_7871#1 ---------------------------------------------- consensus_7871#2 ---------------------------------------------- consensus_7871#0 GAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG 757 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||