These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1302 fasta sequence [TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAACCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTCCATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG] [+] EMBL AK060873 [TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAACCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTCCATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG] consensusID : consensus_7875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1255 fasta sequence [CGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065671 [CGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATA ] [+] EMBL AU068839 [ ATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGC ] [+] EMBL AY364312 [ TCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGACGGACGTCCTTCTGCCGTTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTANTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754097 [ gcacgagGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGATTTTGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAATTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCgaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7875#0 TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCT 60 consensus_7875#1 -----------------------------------------CGCACATTCGCACGCTCCT 19 ******************* consensus_7875#0 GCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCC 120 consensus_7875#1 GCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCC 79 ************************************************************ consensus_7875#0 GCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGC 180 consensus_7875#1 GCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGC 139 ************************************************************ consensus_7875#0 CATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGA 240 consensus_7875#1 CATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGA 199 ************************************************************ consensus_7875#0 GCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGA 300 consensus_7875#1 GCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGA 259 ************************************************************ consensus_7875#0 GGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGA 360 consensus_7875#1 GGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGA 319 ************************************************************ consensus_7875#0 CGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAG 420 consensus_7875#1 CGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAG 379 ************************************************************ consensus_7875#0 CATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCA 480 consensus_7875#1 CATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCA 439 ************************************************************ consensus_7875#0 GCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGAT 540 consensus_7875#1 GCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGAT 499 ************************************************************ consensus_7875#0 CACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGA 600 consensus_7875#1 CACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGA 559 ************************************************************ consensus_7875#0 GCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAA 660 consensus_7875#1 GCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAA 619 ************************************************************ consensus_7875#0 GTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATG 720 consensus_7875#1 GTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATG 679 ************************************************************ consensus_7875#0 GAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCT 780 consensus_7875#1 GAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCT 739 ************************************************************ consensus_7875#0 GGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGG 840 consensus_7875#1 GGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGG 799 ************************************************************ consensus_7875#0 ATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAA 900 consensus_7875#1 ATCATACTCTGCAAAAACAAAG-------------------------------------- 821 ********************** consensus_7875#0 CCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTC 960 consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 CATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGAC 1020 consensus_7875#1 ---------TTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGAC 872 *************************************************** consensus_7875#0 ATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGC 1080 consensus_7875#1 ATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGC 932 ************************************************************ consensus_7875#0 AGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCA 1140 consensus_7875#1 AGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCA 992 ************************************************************ consensus_7875#0 GAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCA 1200 consensus_7875#1 GAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCA 1052 ************************************************************ consensus_7875#0 GGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGG 1260 consensus_7875#1 GGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGG 1112 ************************************************************ consensus_7875#0 TGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG------------------ 1302 consensus_7875#1 TGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCT 1172 ****************************************** consensus_7875#0 ------------------------------------------------------------ consensus_7875#1 CGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAA 1232 consensus_7875#0 ----------------------- consensus_7875#1 AAAAAAAAAAAAAAAAAAAAAAA 1255 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||