These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence [TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT--CCCGCCTCCCAGCGGCAAAGCCTCAA-CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT-TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA-TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG-TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC] [+] EMBL CB659772 [TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATT ] [-] EMBL CB659773 [ TATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC] [-] EMBL BM418529 [ ttttTAAAAACCAGCCGTCATGGCCGATAGNGAGGCTCG TGTCGTTGGCAGGTGCATTACATAGGCTGAAATG TTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCCCGCGTCCCAGCGGCAAAGCCTCAATCGCTCGAGCTGATTCATGTTGGCTGGAGTACTG TTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAA TTGGCAAAGCTCCAATTCTCTCTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTNAGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAACTGGACCCTTCAGCACCACATCATGCTCCTTTATTAAGCTCTCTAAAAGTTG ] consensusID : consensus_7889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence [TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC] [-] EMBL AU174177 [TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTN ] [-] EMBL CB681283 [ TTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCGGCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7889#0 TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCT 60 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 CTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAG 120 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 GAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGG 180 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 AGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAA 240 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 GCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAA 300 consensus_7889#1 --------------------------------------TTTTTTTTTTTGGAAGNAAAAA 22 ** * * ****** ***** consensus_7889#0 CCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 360 consensus_7889#1 CCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 82 ************* ********************************************** consensus_7889#0 AATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 420 consensus_7889#1 AATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 142 ********* ******* ****************************************** consensus_7889#0 ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCG 480 consensus_7889#1 ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCG 202 ********************************** * * ********************* consensus_7889#0 GCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAA 540 consensus_7889#1 GNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAA 262 * **************************************************** **** consensus_7889#0 TGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTC 600 consensus_7889#1 TGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTC 322 ************ ******** *************************** ********** consensus_7889#0 AG-GTGAGAT-CTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 658 consensus_7889#1 AGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 382 ** ******* ************************************************* consensus_7889#0 AATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 718 consensus_7889#1 AAT-----------CTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 431 *** ********************************************** consensus_7889#0 CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCCTTCAGCACC 778 consensus_7889#1 CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC--------- 482 *************************************************** consensus_7889#0 ACATCATGCTCCTTTATTAAGTCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGG 838 consensus_7889#1 ------------------------------------------------------------ consensus_7889#0 CATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC 879 consensus_7889#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||