These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 714 fasta sequence [CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCACACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC-GGCGGCCA-TGAGCACGCTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCGCCGGTGGTCGCCGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAACATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAACTGTCCATGATGAATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGATCAGTGTTCATCCTGTTCGTAATTAGCTAGCATGTAGTACAACTTTCCGGATCTGAAAAAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGCT] [+] EMBL AK062611 [CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCACACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC GGCGGCCA TGAGCACGCTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCGCCGGTGGTCGCCGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAACATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAACTGTCCATGATGAATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGATCAGTGTTCATCCTGTTCGTAATTAGCTAGCATGTAGTACAACTTTCCGGATCTGAAAAAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGCT] [+] EMBL OS06473A [ GATGGTGGATGTGAAGCACACGGCCGGCCACGCCGCGGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGCCAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCG CGGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGGCGGCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTTCTCGAGGGCGCGGGCGGCCATTGAGCACGCTGCGt ] [+] EMBL AU070216 [ gccgcaGCCGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCG CNGCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTGCGG GNCTGCGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGC NGCGGCCA TGAGCACGCTGCGCTCG ANTCCGCCGCCGACTGCTCGTTCGGCACTGCGTTCGCNCCGGTGGTCGCCGTCGG TACTGATGAGCGCGTGCATGTCTTCAANAACGTTCTGGCCTGTGCATGAAGANCATGAAGCCATGGAGCAGTANAACCCCTGTGTATAGACGTGG TAACTGTCCATGNTGAATTC ] [+] EMBL OSR15323A [ gccgcaGCCGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAAGATGGCGGTGGCGAGGCTCGGCGGCGGCGCC GCGGGCGGAGGCGGCTGTTCGGTGCGTTCCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCTCGCTNCGGCGNCTGCGCGCTTACTACGCCAAGGCGGTCCAGGACCTNCTCGAGGGCGC GGCGGCCA TGAGCACGCTGCGCTCGCAAGCCGCCGCCGACTGCTCGTTCGGNACTGCTTTCGCGCCGGTGGTCGCCGTCGGCTAC ] consensusID : consensus_7893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TCTTCCTCTCTGCTCTCAACCGCCGCAGGCGCCACTTCGCCCAACGTTGTGGCGCTCACCCGCCGTCGCCGCTCCGCTCGCTGCGCTCGCCCGCCGCCTCTCCTCCTGCGGTACAGCGCCGCCAACCACCGCACCCGCAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCCGGCGCCGCCGCCGAGCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTGCGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCAGCGCGAAGGTAGCAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGCTGCTGCCCTCGGAGGAAACGGCGCGGCTCTGCTTCTGCTGCCCTAGGAGACCACCATCGACGTAGCTTGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTCTTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTCACAAGGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGCTTTTGATTCATTGTATGTAAATATATGTG] [+] EMBL AK066176 [TCTTCCTCTCTGCTCTCAACCGCCGCAGGCGCCACTTCGCCCAACGTTGTGGCGCTCACCCGCCGTCGCCGCTCCGCTCGCTGCGCTCGCCCGCCGCCTCTCCTCCTGCGGTACAGCGCCGCCAACCACCGCACCCGCAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCCGGCGCCGCCGCCGAGCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTGCGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCAGCGCGAAGGTAGCAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGCTGCTGCCCTCGGAGGAAACGGCGCGGCTCTGCTTCTGCTGCCCTAGGAGACCACCATCGACGTAGCTTGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTCTTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTCACAAGGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGCTTTTGATTCATTGTATGTAAATATATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7893#0 CATTCTCATCGGCAAGCAAAGAGCAAGAGAGAAGAGAGAGGAGATGGTGGATGTGAAGCA 60 consensus_7893#1 ---------------------------------------------------------TCT 3 * consensus_7893#0 CACGGCCGGCCACGCCGGCGCGAGGAGAGTCAAGCTGTTCCGGGTGCCGCGGCGGCCGGC 120 consensus_7893#1 TCCTCTCTGCT-CTCAACCGCCGCAGGCGCCA--CTTCGCCCAACGTTGTGGCGCTCACC 60 * * ** * * *** * * ** ** ** * * **** * * consensus_7893#0 CAGGGCGGCGGAGGAGGCGGGGGCGCCGCTGGTACCGGCTGGCGAGAGGAGGAAGAGGAA 180 consensus_7893#1 CGCCGTCGCCGCTCCGCTCGCTGCGCT-CGCCCGCCGCCTCTCCTCCTGCGGTACAGC-- 117 * * ** * * * **** * *** ** * * ** * ** consensus_7893#0 GATGGCGGTGGCGAGGCTCGGCGGCGGCGCCGGCGGGCGGAGGCGGCTGTTCGGTGCGTT 240 consensus_7893#1 GCCGCCAACCACCGCACCCG-CAGCCACCGGAATGCACCGAACAGCCGCCTCCGCCCGCC 176 * * * * * ** * ** * * * ** * * ** * ** consensus_7893#0 CCGGCGGCTGCGGGTGCGGTGGCTGGCGGCGCTGTACCGCCGCT-CGCTGCGGCGGCT-G 298 consensus_7893#1 GGCGCCGCCGCCGA-GCCTCGCACGGTCACACGGCGGCGCGACGACGCAGCAGAAACTTG 235 ** ** ** * ** * ** * * * *** * *** ** * ** * consensus_7893#0 CGCGCGTACTACGCCAAGGCGGTCCAGGACCTCCTCGAGGGCGCGGCGGCCATGAGCACG 358 consensus_7893#1 CGGAGGGAGGGAGCGGCGACGGGATGGGCACTGAGGGAGGGAGCGCGCGTGGTAACGGCA 295 ** * * ** * *** ** ** ***** *** * * * * consensus_7893#0 CTGCGCTCGCAGGCCGCCGCCGACTGCTCGTTCGGCACTG-CGTTCGCGCCGGTGGTCGC 417 consensus_7893#1 GCGCGAAGGTAG--CAGCGGCGACTGCACTCGAGGGAGTGGCGTTGGCAGCGGCGGCTGC 353 *** * ** * ** ******* * ** * ** **** ** *** ** ** consensus_7893#0 CGTCGGCTACTGATGAGCGCGTGCATGTCTGCAGCACCGTTCTGGCCTGTGCATGAAGAA 477 consensus_7893#1 TGCTGCCCTCGGAGGAAACGGCGCGGCTCTGC-------TTCTG--CTGCCCTAGGAGAC 404 * * * * ** ** * ** ***** ***** *** * * *** consensus_7893#0 CATGAAGCCATGGAGCAGTAGCACCCCTGTGTATAGACGTGGTTAAC-TGTCCATGATGA 536 consensus_7893#1 CACCAT-CGACGTAGCT-TGCTCGTCCAGCATCCAAGCCTGACATCCACCCCCACCTCTC 462 ** * * * * *** * ** * * * * ** * *** consensus_7893#0 ATTCCAGTGCTGATCTTTTTTCTCTCTTCATTTTATGGATCTCGAGTTCTCGACAATGAT 596 consensus_7893#1 TTTTGACTGCTGCTACCAGGAAAGACTTGCTTGTGTGTGTTGTCAGTTGTC-ACAA---- 517 ** * ***** * *** ** * ** * **** ** **** consensus_7893#0 CAGTGTTCATCCTGTTCGTAATTAGCTA-GCATGTAGTACAACTTT--CCGGATCTGAAA 653 consensus_7893#1 -GGTGTTCGACAAACTTGATGTTGGATATGAATATCGGTTGGATTTGGCTATATCTGTGC 576 ****** * * * ** * ** * ** * * *** * ***** consensus_7893#0 AAAATAATTATATTATGTTAAAGAAGAGAGAAGATAGTAAGAGAAAAAAAATATATTCGC 713 consensus_7893#1 TTTTGATTCATTGTATGT-AAATATATGTG------------------------------ 605 * * ** ***** *** * * * consensus_7893#0 T 714 consensus_7893#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||