These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2009 fasta sequence [TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCCGCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGCCGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATCTCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTCCTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGATCTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCGGCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTTCGT] [+] EMBL AK121407 [TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCCGCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGCCGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATCTCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTCCTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGATCTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCGGCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTTCGT] [+] EMBL CB651836 [ GCGGCCGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTG ] [-] EMBL CB651837 [ ATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTT ] [+] EMBL CA882869 [ GTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTC ] consensusID : consensus_7952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATAATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTACAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG] [+] EMBL D43375 [GGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATAATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTACAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7952#0 TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCC 60 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 GCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGC 120 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCG 180 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCG 240 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATC 300 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTC 360 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCG 420 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 AAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGAT 480 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCG 540 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 GCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGG 600 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAG 660 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 ATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGG 720 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAG 780 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 GATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGC 840 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 AAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCA 900 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 AGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATA 960 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCT 1020 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTAT 1080 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 ATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCT 1140 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGT 1200 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 GCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAAT 1260 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 GTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCC 1320 consensus_7952#1 -------------------------------------------------------GGGCC 5 ***** consensus_7952#0 TATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTG 1380 consensus_7952#1 TATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTG 65 ************************************************************ consensus_7952#0 ATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATC 1440 consensus_7952#1 ATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATA 125 ***************************** * ******* ******* * **** consensus_7952#0 ATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATA 1500 consensus_7952#1 ATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTA 185 ******* ******************************************* ***** ** consensus_7952#0 CAGGGGAGCGCAGAGATCCCCGTGAAGAAT-GTTACTTTCCATGATATGTCAGTCGGTTT 1559 consensus_7952#1 CAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG---- 241 ******************** **** * ** ***************** ****** consensus_7952#0 GGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTA 1619 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAA 1679 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 ACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCT 1739 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 CTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTAC 1799 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 AGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTA 1859 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 AGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCA 1919 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAAT 1979 consensus_7952#1 ------------------------------------------------------------ consensus_7952#0 TTCTCTGTTGAGAGCAATAAAGTTCTTCGT 2009 consensus_7952#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||