These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1601 fasta sequence [GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGGTGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGACGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGTCCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCGCCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGCCGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGTGGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTGTCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGACGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATGAGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGATAGGAATGCACTCGGT-AAATGCCGTTTTCTTGCTT-GGTGAAGCTGCCCTG-AATAGCTTGAGCTTCCCTT-GGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTCAATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTCATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG] [+] EMBL AK120974 [GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGGTGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGACGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGTCCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCGCCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGCCGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGTGGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTGTCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGACGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATGAGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGATAGGAATGCACTCGGT AAATGCCGTTTTCTTGCTT GGTGAAGCTGCCCTG AATAGCTTGAGCTTCCCTT GGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTCAATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTCATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG] [+] EMBL C74799 [ TACGTCGCCCATGGAGCTGGTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTTACCTGCTCCAGATCATCTANCAGACAAATGNAGGCGCAGTGATGCTTACAGATTGTGTGTTTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTNTTTGTTGATAGGAATGCACTCGGTAAAATGCCGTTTTCTTGCTTGGGTGAAGCTGCCCTGAAATAGCTTGAGCTNCCCTTGGGTTCCG ] consensusID : consensus_7970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 595 fasta sequence [CTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG-ATATTTGTTAACAAAAAAAAAAAAAAAAAAA] [-] EMBL CF303799 [CTCGATGTTTCAGCTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG ATATTTGTTAACAAAAAAAAAAAAAAAAAAA] [-] EMBL CF303574 [ CAATTACCATGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAG ATATTTGTTAACAAAAAAAAAAAAAAAAAAA] [-] EMBL CF304748 [ CCGGGTTCAGTCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTCAAATGGAGGAGAATATTTGTTAACAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7970#0 GATCGGTGGTCGAACACATGTTCCACGGCTCGCCGGCGGCGGTGGCGGCGTCGGCGGCGG 60 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 TGGCGGAGATGAGGTTCACGACGGGGGGGTCGTCGACGCGGTCGTGGGAGCCGACGGTGA 120 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 CGGCGGACACGTCGGACCTGCACTACTGGATGCAGTGGCGCGCCGCGGTGTGCGCGCTGT 180 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 CCGTGCTCGCGTGCATGGCCGTCGCGGCGTGCCTCGTGTGGCGCCACGAGGGCCCCGGCG 240 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 CCGAACGCCGCCCCGGCGGCGCGTCCGGCGGCGGCGGCGGGAGCAAGGAGCGGCGGCGGC 300 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 CGGGGGTGCTGTACGACGACGAGGCGTGGCGGCCATGCCTCCGGGACATCCACCCGGCGT 360 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 GGCTGCTCGGCTACAGGCTCATCTCCTTCTTCGTCCTCCTCAGCTTGCTCATCGTCATTG 420 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 TCATCTCCGATGGTGGCACCATCTTCTACTACTACACTCAGTGGACCTTCATTCTGGTGA 480 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 CGATTTACTTCGGGCTCGGCACGGCGTTGTCCATCTATGGATGCAGCAAGCTTGCTGATG 540 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 AGAATGTTGTCACTGAAAGAACAGACATGGAGCTCGGCTCGTACGTCGCCCATGGAGCTG 600 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 GTACTAAACCCAATTTGAATGGGGAAGATGACACAGGAGAGATTGCTGGATTCTGGGGTT 660 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 ACCTGCTCCAGATCATCTACCAGACAAATGCAGGCGCAGTGATGCTTACAGATTGTGTGT 720 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 TTTGGTTCATCATCTTCCCATTCCTTACAGTCAAAGATTACAATCTAAATTTTTTGTTGA 780 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 TAGGAATGCACTCGGTAAATGCCGTTTTCTTGCTTGGTGAAGCTGCCCTGAATAGCTTGA 840 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 GCTTCCCTTGGTTCCGGGTCGCATATTTCTTTCTCTGGACTGCTCTCTATGTCATTTTTC 900 consensus_7970#1 ------------------------------------------------------------ consensus_7970#0 AATGGATTCTCCATGCATCAACTCCACTTTGGTGGCCATACCCATTTCTCGATGTTTCAG 960 consensus_7970#1 -----------------------------------------------CTCGATGTTTCAG 13 ************* consensus_7970#0 CTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGG 1020 consensus_7970#1 CTAATTTATCTCCTTTGTGGTACTTCGCCGTCGCGATCATGCAATTACCATGCTACGCGG 73 ************************************************************ consensus_7970#0 TATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAG 1080 consensus_7970#1 TATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAG 133 ************************************************************ consensus_7970#0 TCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATT 1140 consensus_7970#1 TCGTAAGAGGCTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATT 193 ************************************************************ consensus_7970#0 GCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCC 1200 consensus_7970#1 GCCAACAGTTTATACAGAAAGGGCAATGGTGAAGATCACAAGAAAAGAATAATGGCAGCC 253 ************************************************************ consensus_7970#0 TGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCG 1260 consensus_7970#1 TGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTCCTCCTTTGCG 313 ************************************************************ consensus_7970#0 AGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCAC 1320 consensus_7970#1 AGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCAC 373 ************************************************************ consensus_7970#0 ATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCA 1380 consensus_7970#1 ATGCGTTTTACACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCA 433 ************************************************************ consensus_7970#0 GATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAAC 1440 consensus_7970#1 GATATGAGATTCAGAGAGTTTTTCTTTTTCTTTTTGGATGTAATGGAAACTGAAATGAAC 493 ************************************************************ consensus_7970#0 AGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTC 1500 consensus_7970#1 AGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGACTGATTGGTC 553 ************************************************************ consensus_7970#0 AAATGGAGGAGATATTTGTTAACATTTTTTTTATTTTGTAGAGCTGATTAATTAATGGTC 1560 consensus_7970#1 AAATGGAGGAGATATTTGTTAACAAAAAAAAAAAAAAAAAAA------------------ 595 ************************ * * * consensus_7970#0 ATTTGTATATGTGATTAATGCTAATGAGTAATGAATGGATG 1601 consensus_7970#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||