These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1206 fasta sequence [AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAA-AATATAG-CTAGAAATGCATTTATATTTTTCTCCAACAAAAAAGGA] [+] EMBL AK069543 [AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAA AATATAG CTAGAAATGCAT ] [+] EMBL AU095041 [ anGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATTGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGG AACCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGG ACGGCCTGCTG CAATGCTGAAGAGG ACA CTCA TCAAG TGGCG CG A AAGTGG AAGACAATGCC GC AT GGNTGTTT ] [+] EMBL CB680727 [ ACCCCTCACTGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGCGGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAGGAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCACTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAAGCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGTCATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCCAATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGGCGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGC ] [-] EMBL CB680728 [ TCTTCGACTTAATCGTCGATGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGTGAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAATTGAGGTACCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCTTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAATTTCAGTGGTGATGGCTTTCAAGGGTATAGTCTAGAAATGCCATTATATTTTTCTCCAACAAAAAAGGA] consensusID : consensus_7983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATNGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030263 [AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAAGCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGAGAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATNGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTATCAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7983#0 AAAGCGGACAGCCACACACCCCTCACAGGCGAGCTCGGTCGGAGCGGCGGCGGCGGCGGC 60 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 GGCGAACCGACCCTACCTTGCCGGCGGCGAGCGGCGGCGGCGGATGGGCATGGAGGCGAG 120 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 GAGGAAGATGAGGTTCGCGATGGTGTGCTCGTCGAACATGAACCGGAGCATGGAGGCGCA 180 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 CTCGCTGCTCGGCCGCGCGGGGCTCGACGTCGCCTCCTACGGCACCGGCACCCACGTCAA 240 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 GCTCCCCGGCCCTTCCCTCCACGAGCCCAACGTCTACGACTTCGGCACCCCCTACAACGT 300 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 CATCTACGACGACCTCCGCCGCAAGGACCCCGACCTGTACAAGAGGAACGGCCTGCTGCC 360 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 AATGCTGAAGAGGAACACCTCAGTCAAGCTGGCGCCGCAGAGGTGGCAGGACAATGCCGG 420 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 CGATGGGCTGTTTGATGTGATATTCAGCTTTGAGGAGAGGGTCTTCGACTTAATCGTCGA 480 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 TGATATGCATAACCGTGAGCAAAGGATGCTAAAGAACGCGCTGATAATCAATATGGATGT 540 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 GAAAGATAACCATGAAGAAGCTGGTGTTGGTGCAAAGCTTGCTTTAGATTTGTGTCAGAA 600 consensus_7983#1 ---------------AGAAGCTGGTGTTGGTGCANNGCTTGCTTTAGATTTGTGTCAGAA 45 ******************* ************************ consensus_7983#0 GCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGA 660 consensus_7983#1 GCTTGAAGGGGCAGATGAAGATTGGGAGGAAATTATTGATGACCTGATTATTACATTTGA 105 ************************************************************ consensus_7983#0 GAAGCAGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCAT 720 consensus_7983#1 GAAGCNGCACAAGCGGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCAT 165 ***** ****************************************************** consensus_7983#0 CGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGC 780 consensus_7983#1 NGTGCGGATTATACAGAGGCAGCAGAATCATTCTTAAATTAACTCGATCGTGTGGATGGC 225 *********************************************************** consensus_7983#0 TGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCAAGTGTG 840 consensus_7983#1 TGGTAGCTTGGCATNCAGGGAAATGTACAAAAACTGAGGTNCCAACTGGATCCAAGTGTG 285 ************** ************************* ******************* consensus_7983#0 GTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATG 900 consensus_7983#1 GTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATG 345 ************************************************************ consensus_7983#0 TTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTT 960 consensus_7983#1 TTCTGCGTTGAGTCGCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTT 405 ************************************************************ consensus_7983#0 GAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGC 1020 consensus_7983#1 GAAGCTACCCATCATCTCAAAACCATGCAGCACCGAATGTTACTCATTTGCTTTAGTGGC 465 ************************************************************ consensus_7983#0 TGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTAT 1080 consensus_7983#1 TGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTGGCCTAT 525 ************************************************************ consensus_7983#0 CAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGACCAAAACCATGAAT 1140 consensus_7983#1 CAGTACAGTACAGTAAGATTCAGNNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAA----- 580 *********************** ****** * * * * * **** * consensus_7983#0 TTCAGTGGTGATGGCTTTCAAAATATAGCTAGAAATGCATTTATATTTTTCTCCAACAAA 1200 consensus_7983#1 ------------------------------------------------------------ consensus_7983#0 AAAGGA 1206 consensus_7983#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||