These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 820 fasta sequence [CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC-TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA-GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT] [+] EMBL CA767339 [CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAGAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGGATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT] [+] EMBL AU091985 [ TTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTG ] [+] EMBL OSC25921 [ CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGGTTTTCATGTACTCAGAAACC ] [+] EMBL OSC25642 [ CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTTGCAAATTGCAGTTGTT ] consensusID : consensus_7996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA] [+] EMBL AU091986 [GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7996#0 CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTAC 60 consensus_7996#1 ------------------------------------------------------------ consensus_7996#0 CTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTC 120 consensus_7996#1 ------------------------------------------GGCCGGCACCAATGCTTC 18 * ** ************ consensus_7996#0 CGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAA 180 consensus_7996#1 CGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAG 78 *** *************************************************** * * consensus_7996#0 GGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 240 consensus_7996#1 GCCCAAATG-ACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 137 * ******* ************************************************** consensus_7996#0 GACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 300 consensus_7996#1 G-CCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 196 * ********************************************************** consensus_7996#0 AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 360 consensus_7996#1 AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 256 ************************************************************ consensus_7996#0 CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAG 420 consensus_7996#1 CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAG 316 *************************************************** ******** consensus_7996#0 TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 480 consensus_7996#1 TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 376 ************************************************************ consensus_7996#0 TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 540 consensus_7996#1 TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 436 ************************************************************ consensus_7996#0 CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 600 consensus_7996#1 CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 496 ************************************************************ consensus_7996#0 ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 660 consensus_7996#1 ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 556 ************************************************************ consensus_7996#0 GTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAG 720 consensus_7996#1 GTTCATAATCAAATATCAG-TTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAG 615 ******************* ****** ********************************* consensus_7996#0 CATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAAT 780 consensus_7996#1 CATGATTGCCTAAAAAAAAAAAAAAAA--------------------------------- 642 ************ * * * consensus_7996#0 TTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT 820 consensus_7996#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||