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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 820 fasta sequence
[CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC-TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA-GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT]
[+] EMBL CA767339 [CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTACCTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAGAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGGATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAATTTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT]
[+] EMBL AU091985 [ TTCCGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAAGGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTA GGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTG ]
[+] EMBL OSC25921 [ CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGAC TGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGGTTTTCATGTACTCAGAAACC ]
[+] EMBL OSC25642 [ CCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTTGCAAATTGCAGTTGTT ]
consensusID : consensus_7996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA]
[+] EMBL AU091986 [GGCCGGCACCAATGCTTCCGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAGGCCCAAATGACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGAGCCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGTTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAGCATGATTGCCTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7996#0 CACCATTTATGGCTCCTGGAGTTAATGCCAGGCCCCTTCCACCACCCCCTCCGGGATTAC 60
consensus_7996#1 ------------------------------------------------------------
consensus_7996#0 CTCCAGCACAGATGCAAATGGCACCCTTTGGTGTACCTCCTGGTCCACCACCAATGCTTC 120
consensus_7996#1 ------------------------------------------GGCCGGCACCAATGCTTC 18
* ** ************
consensus_7996#0 CGCCTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGTCCAA 180
consensus_7996#1 CGCTTCCATTTTATCCAGGACCCCCAATTCAAACAGGTGATTTTGCTGCCTTTGGCCAAG 78
*** *************************************************** * *
consensus_7996#0 GGCCAAATGTACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 240
consensus_7996#1 GCCCAAATG-ACCTCAGCAGCCATCATATGTCAAGTCAGCTGCCCCAACAGTTGTAAAGA 137
* ******* **************************************************
consensus_7996#0 GACCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 300
consensus_7996#1 G-CCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTA 196
* **********************************************************
consensus_7996#0 AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 360
consensus_7996#1 AGAGAGAATCGGCTCTCCTCAAACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCAT 256
************************************************************
consensus_7996#0 CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTCGTCCTCAG 420
consensus_7996#1 CTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGCCCCGGCCTTNGTCCTCAG 316
*************************************************** ********
consensus_7996#0 TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 480
consensus_7996#1 TATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAAT 376
************************************************************
consensus_7996#0 TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 540
consensus_7996#1 TGGGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAA 436
************************************************************
consensus_7996#0 CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 600
consensus_7996#1 CTAAGCATGAGCCCTCTTTGCGTTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACC 496
************************************************************
consensus_7996#0 ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 660
consensus_7996#1 ATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTTTTGTGAAAATGGGGAAAC 556
************************************************************
consensus_7996#0 GTTCATAATCAAATATCAGGTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAG 720
consensus_7996#1 GTTCATAATCAAATATCAG-TTGCTGTGCAACACAACTGTACCAAGTCAAATCAATAGAG 615
******************* ****** *********************************
consensus_7996#0 CATGATTGCCTATCTTCACAGGTTGTATGNTCAACGAGNTGNCCTGGCAGATATTCAAAT 780
consensus_7996#1 CATGATTGCCTAAAAAAAAAAAAAAAA--------------------------------- 642
************ * * *
consensus_7996#0 TTAAANCACCCAGTCCGNGGGGNGACACGACTAATAGCTT 820
consensus_7996#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||