These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATACCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAATAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCACTTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT] [+] EMBL AK062877 [CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATACCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAATAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCAGTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCACTTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT] consensusID : consensus_800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TGCGGTACTCGGCGTCNATACTGGTAAAAGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATAAGCTTGATATCNAATTCGGCACNAGCTCGTGCCNAATTCGGCACAAGGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTNTCGGTTTCGGGTACAGGTACCCCTTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACTTCAGCGCCGTANCGCCTGNTNTNAGCCTCGTGGAAAACAATGGCTANTCCACGGGGCTCATACTTCANCGCTGCACGCTTGGTACTCGGACC] [+] EMBL AA753149 [TGCGGTACTCGGCGTCNATACTGGTAAAAGGCTGGGTGGTTGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAAGCAGGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATAAGCTTGATATCNAATTCGGCACNAGCTCGTGCCNAATTCGGCACAAGGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTNTCGGTTTCGGGTACAGGTACCCCTTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACTTCAGCGCCGTANCGCCTGNTNTNAGCCTCGTGGAAAACAATGGCTANTCCACGGGGCTCATACTTCANCGCTGCACGCTTGGTACTCGGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_800#0 CAGAGAGCCTTGGTTCCATTCAGACAAAAAAGCTGACTTAGATGTTAAGTGGTGAGAATA 60 consensus_800#1 ------------------------------TGCGGTACTCGGCGTCNA-TACTGGTAAAA 29 ** * * * ** * * ** ** * consensus_800#0 CCCATAAAGGAGCCGAATGAAATCAAAATTTCATGTTCGGTTTTGAATTAGAGACGTTAA 120 consensus_800#1 GGCT--GGGTGGTTGGGCGGTATCCAA---CCCTTTTTATTCATTAGTTCCCGACCCTA- 83 * * * * * *** ** * * ** * * * ** *** ** consensus_800#0 TAATAATCAACCAACGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGA 180 consensus_800#1 TAAGGCCAAATTGAAGCAGGTTGCGAA--GTAACTTGCTACCACAA-GAGGAACTCTCAA 140 *** ** * * * * * ** * * * * ** ** * ** * consensus_800#0 TTCCCGCTACCCGCTCCATTCTGTATAAAATAACTATTCTATTTGTCTA-GACATGGTAG 239 consensus_800#1 GGCCCCCTCCCTACCTTGCAAAAAAAAAAAAAAAAAAACTCNAGGTCAACGGTATCNATA 200 *** ** ** * * **** ** * ** *** * * ** consensus_800#0 AGGCCTGTATTCAACCTTTTTCGTCCACCGGTTTCCAGCGCTCCAGAGCGGAGTAGAGCA 299 consensus_800#1 AGCTTGATATCNAA--TTCGGCACNAGCTCGTGCCNAA---TTCGGCACAAGGT---GCC 252 ** *** ** ** * * ** * * * * * * ** ** consensus_800#0 GTTTGGTAGCTCACGAGGCTCATAACCTTGAGGTCACGGGTTCGATTCCCGTCTCCGCAC 359 consensus_800#1 CCCTAGGTATTCTCTAC-CTACCCACCT----GTNTCGGTTTCGGGTACAGGTACCCC-- 305 * * ** * * ** **** ** *** **** * * * ** * consensus_800#0 TTAGCAGTCTGTATAAAATAACTATTCTATTTGTCTAGACATGGTAGAGGGCTGGGTGGT 419 consensus_800#1 -------TTTGTTNAAGGTCGTNCNANCTTTNCCTGGGATTTTTTNTTGGGTTACATACT 358 * *** ** * ** ** * * *** * * * consensus_800#0 TGGGCGGTATCCAACCCTTTTTATTCATTAGTTCCCGACCCTATAAGGCCAAATTGAGCA 479 consensus_800#1 TCAGCGCCGTANCGCCTGNTNTN------AGCCTCGTGGAAAACAATGGCTANTCCACGG 412 * *** * ** * * ** * * ** * * * * * consensus_800#0 GGTTGCGAAGTAACTTGCTACCACAAGAGGAACTCTCAAGGCCCCCTCCCTACCT 534 consensus_800#1 GGCT----CATACTTCANCGCTGCACGCTTGGTACTCGGACC------------- 450 ** * ** * * ** * *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||