These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence [TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTAAGAGGGA] [+] EMBL CB682355 [TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTG ] [-] EMBL CB682354 [ GCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTAAGAGGGA] consensusID : consensus_8003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CTGATGTGACCCAGAGGAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGGGACGGTGCAGGTCGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCCTTGGTGTCCTGCCCGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTGGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTNGGGTGC] [-] EMBL CA755008 [CTGATGTGACCCAGAGGAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGGGACGGTGCAGGTCGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCCTTGGTGTCCTGCCCGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTGGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTNGGGTGC] consensusID : consensus_8003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAG] [-] EMBL AK063057 [AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGCTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCGCGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCGCCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCGTTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACGGTGCAG] consensusID : consensus_8003#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CCGGNTTCGGCAGCNGCGGGTACCACTTCCGGGACCNCCCATCTCCACGCCGCCCCGGGTTCCCCGGTGCNCGCACGGATGTTGCTGTGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTGCGAGGGA] [-] EMBL AU056633 [CCGGNTTCGGCAGCNGCGGGTACCACTTCCGGGACCNCCCATCTCCACGCCGCCCCGGGTTCCCCGGTGCNCGCACGGATGTTGCTGTGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTGGTGTCCTGCCAGTAGCCGCCGGGGATGTTGGTGCCGAGCTGGTACGTGAGCGTGGTGATCAGCGTGGCCACAACCAGCAGCGTGTTGGCGTCGTTGCCCACCCAGTGGTTGGGGCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGGGTACACGGCCGGGACGCCCATCTCCACGCCGCCCGGGTCCCGGTGCGCGCACGGATGTTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAATTCACAAGTGAACATTGATTGGCAGATGGCTCTGACCCGTTGGGTGCGTGTTGCGAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8003#1 ------------------------------------------------------------ consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 TCTTTCTTTTTTTTTTTTGACGAGAGACATCAATTCATCCAATTTGCCAACCATCTCCAT 60 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 ------------------------------------------------------------ consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 CAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATCGCAACAGGC 120 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 ------------------------------------------------------------ consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 TAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCGCGGTTTCTTCAGCTGTTGTGGCCGCA 180 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 --------------------------------------------CTGATGTGACCCAGAG 16 consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 GCAGATCGCCTGGGCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAG 240 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 GAAGCCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCTTGGGTTGCGA 76 consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 GAAGGCGAGGACGGCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGA 300 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 CACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCG 136 consensus_8003#3 ------------------------------------------------------------ consensus_8003#0 CACGATGAACGTGAGCACCAGCGTGGAGTACGCCACCGCGAACGACCACCGGACGTTGCG 360 consensus_8003#2 ------------------------------------------------------------ consensus_8003#1 CGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCAT--CGAGCTCGCGAAC 194 consensus_8003#3 --------CCGGNTTCGGCAGCNGCGGGT--------ACCACTTC--CGGGACCNCCCAT 42 consensus_8003#0 CGAGTCCACGGGCATCCGCACCAGCAGGCTCAGCGTCATCACCAT--CGAGCTCGCGAAC 418 consensus_8003#2 -AATTTGCACAGGAACGGGAATCGAGGGACGAGAGACATCAATTCATCCAATTTGCCAAC 59 * * * * * ** * ** * * * consensus_8003#1 CCCATCCAGCTCGCC--CCCATGAACACCCAGTACCTG---------------------- 230 consensus_8003#3 C---TCCACGCCGCC--CCG--GGTTCCCCGGTGCNCG---------------------- 73 consensus_8003#0 CCCATCCAGCTCGCC--CCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCCG 476 consensus_8003#2 CATCTCCATCAAGTAAGCACAGGAGCGTTCACGAATCGTCGATTAGTGAGAGAGAAAATC 119 * **** * * * * * consensus_8003#1 -----------------------------------GGACGGTGCAGGT------------ 243 consensus_8003#3 -----------------------------------CACGGATGTTGCTG----------- 87 consensus_8003#0 TTCAATTCGATCGTTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACG 536 consensus_8003#2 GCAACAGG-----------------CTAATGAAGGAATCAGTGGTGGTGCGCCGTGCGCG 162 * * * consensus_8003#1 ---------------------CGCGCATGAGGGGGTCGCGGGCGCGGTGGTCGTCC-TTG 281 consensus_8003#3 ---------------------TGACCATGGCCCAGGAGCGGCCTCGNTGGTCGTCCCTTG 126 consensus_8003#0 TGTACCTGGGACGGTGCAGGTCGCGCATGATGGGGTCGCCGGCGCGGTGGTCGTCC-TTG 595 consensus_8003#2 C--------------------GGTTTCTTCAGCTGTTGTGGCCGCAGCAGATCGCC-TGG 201 * * * * * * * * ** * * consensus_8003#1 GTGTCCTGCCCGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 335 consensus_8003#3 GTGTCCTGCCAGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 180 consensus_8003#0 GTGTCCTGCCAGTAGC-CGCCGGG--GATGTTGGTGCCGAGCT---GGTACGTGAGCGTG 649 consensus_8003#2 GCGATTTTCGCGCGGCGCTCCGGGCGGAGGCTGATGGTGAACCAGAGGAAGGCGAGGACG 261 * * * * * ** * ***** ** * ** ** ** * ** * * *** * consensus_8003#1 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-GGGCGTCGTTGCCCACCCAGTGGTTGGG 394 consensus_8003#3 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-TGGCGTCGTTGCCCACCCAGTGGTTGGG 239 consensus_8003#0 GTGATCAGCGTGGCCACAACCAGCAGCGTGT-TGGCGTCGTTGCCCACCCAGTGGTTGGG 708 consensus_8003#2 GCGACCCAGACGAGGATGTCCAGCGACAGGTGCGTCCTGGGCTGCGACACGATGAACGTG 321 * ** * * * ***** * ** * * * * * ** * ** * * consensus_8003#1 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 454 consensus_8003#3 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 299 consensus_8003#0 GCCTCCCCCGCCGAGCCGCTCCTGGTCCATGGCCTGCTCGTTCGGGTTCGGCAGCGGCGG 768 consensus_8003#2 AGCACCAGCGTGGAGTACGCCACCGCGAACGACCA--CCGGACGTTGCGCGAGTCCACGG 379 * ** ** *** * * * * ** ** ** * * *** consensus_8003#1 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 511 consensus_8003#3 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 356 consensus_8003#0 GTACACG-GCCGGGACGCCCATCTCCA-CGCCGCCCGGGTCCCGGTGCGCGCACGGAT-G 825 consensus_8003#2 GCATCCGCACCAGCAGGCTCAGCGTCATCACCATCGAGCTCGCGAACCCCATCCAGCTCG 439 * * ** ** * * ** ** * ** * ** * * ** ** * * * * * * consensus_8003#1 TTGCTGTGCCAGGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 571 consensus_8003#3 TTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 416 consensus_8003#0 TTGCTGTGCCATGGCGCCACACGGCCTTTGCTTAGCTTCTCAACCAGGTCAGCTCACAAT 885 consensus_8003#2 CCCCCATGAACACCCAGTACCTGACCATTACACAGCCGCGTGCC--GTTCAATTCGATCG 497 * ** * ** * ** ** * *** * * * *** ** consensus_8003#1 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-NGGGTGC-------- 617 consensus_8003#3 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-TGGGTGCGTGTTGCG 470 consensus_8003#0 TCACAAGTGAACATT---GATTG--GCAGATGGCTCTGACCCGT-TGGGTGCGTGTTAAG 939 consensus_8003#2 TTGTCGTCGAGCCCTTCCGATGCATGTACGTAGCTGTGGACAGTACGTGTACCTGGGACG 557 * ** * * *** * * * *** ** * ** * ** * consensus_8003#1 ------ consensus_8003#3 AGGGA- 475 consensus_8003#0 AGGGA- 944 consensus_8003#2 GTGCAG 563 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||