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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 871 fasta sequence
[CCGTGGAGCACTCGATCTCCAAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCTCTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGCCTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGAGAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAGCGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACCGCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTG-CCGGACGACTCTGATGCACCCACCTGGAG-CCTCAACTGTGCAGTGTG-CAACCTGCAGATATGTTAACCATGT-CAGGGATGCTCGGCCT-CAAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGAGCAATGTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCCA-AGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACAAAGCTATTGTTAAATCAAGTGTGTTTTGAAGCTTGATATAAACA-AGAGAAAAACAATAGGGCAAAAAATGAAGAAAAAAATATATCCGAAATGTGCCATGTTTGTGCTTCTTTTGTGAG-AAAAAAAATGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTAGCAAAAAGGAATGGAAATGAGATGAGCAGCATTGTGTCCTGGAAAAAAAAA]
[+] EMBL AK120454 [CCGTGGAGCACTCGATCTCCAAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCTCTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGCCTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGAGAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAGCGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACCGCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTG CCGGACGACTCTGATGCACCCACCTGGAG CCTCAACTGTGCAGTGTG CAACCTGCAGATATGTTAACCATGT CAGGGATGCTCGGCCT CAAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGAGCAATGTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCCA AGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACAAAGCTATTGTTAAATCAAGTGTGTTTTGAAGCTTGATATAAACA AGAGAAAAACAATAGGGCAAAAAATGAAGAAAAAAATATATCCGAAATGTGCCATGTTTGTGCTTCTTTTGTGAG AAAAAAAATGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTAGCAAAAAGGAATGGAAATGAGATGAGCAGCA ]
[+] EMBL OSS1153A [ ACTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTG CCGGACGACTCTNATGCACCCACCTGGAG CCTCAACTGTGCAGTGTG CAACCTGCAGATATGTTAACCATGT CAGGGATGCTCGGCCT CAAACTGTCCTTGTAGAGAATCNTAAGACACTGGATGATAAGGGCAAGCTGGTGAGCAATGTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCCA AGGGTCTATGGgat ]
[+] EMBL AU033018 [ CTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTGCCCGGACGACTCTGATGCACCCACCTGGAGCCCTCAACTGTGCNGTGTGCCAACCTGCAGATATGTTAACCATGTCCAGGGATGCTCGGCCTCCAAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGAGCAATGTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCCA AGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACAAAGCTATTGTTAAATCAAGTGTGTTTTGAAGCTTGATATAAACA AGAGAAAAACAATAGGGCAAAAAATGAAGAAAAAAATATATCCGAAATGTGCCATGTTTGTGCTTCTTTTGTGAGAAAAAAAAATGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTAGCAAAAAGGAATGGAAATGAGATGAGCAGCATTGTGTCCTGGAAAAAAAAA]
[+] EMBL BI808440 [ TTGCACACCTGACATGC GGCAGTG CCGGACGACTCTGATGCACCCACCTGGAG CCTCAACTGTGCAGTGTG CAACCTGCAGATATGTTAACCATGT CAGGGATGCTCGGCCT CAAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGACCATTGT TTTGT TCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCCACAGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACCAAGCTATTGTTAAATCAAGTGTGTTTTGAAGCTTGATATCCACACAGAGAAAAAC GTAGGGCCAAAAATGAAGAAAAAAATATATCCGAAATGTGCCATGTTTGTGCTTCTTTTGTGAG AAAAAAAATGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTAGC AAAAGGAATGGAAATGAGATGAGCAGCCTTGTGTCCTGGAAAAA ]
consensusID : consensus_8030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 865 fasta sequence
[AAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCTCTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGCCTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGAGAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAGCGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACCGCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTGCCGGACGACTCTGATGCACCCACCTGGAGCCTCAACTGTGCGTGTGCAACCTGCAGATATGTTAACCATGTCANGGATGCTCGGCCTCAAACTGGTCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGACACATTGTGGGTTGTGTGCACCTCATGGAAAGATGATGAACAGGGCTCATCTAGGGTAATCCCAGGGTCTATGATGATGAAACCCTGGTGATTGATCATACTCAAGACTATGTAAAATCAGTGGTTGAACTGTTAACAGAGAAACATAGGCAAATTGGAAAAAATTTCCAAGGGCCGGTTGCTCTTGGAAAAAAAGAATCCGGCTGCGTGCATGCTTTCAAAGAAGAAGAAGGAACATGCTGCTAAAAAAAAAAAATAAAAATAAAAAGAAAAATAAAGGGGGCGGCGGCCCTAATATCTCTGGGTAAATATAGTAAGAGAGAATATGGTGCTACACTTCCCTCTTATATCC]
[+] EMBL AW155234 [AAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCTCTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGCCTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGAGAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAGCGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACCGCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCAACCAGATTGCACACCTGACATGCGGGCAGTGCCGGACGACTCTGATGCACCCACCTGGAGCCTCAACTGTGCGTGTGCAACCTGCAGATATGTTAACCATGTCANGGATGCTCGGCCTCAAACTGGTCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGACACATTGTGGGTTGTGTGCACCTCATGGAAAGATGATGAACAGGGCTCATCTAGGGTAATCCCAGGGTCTATGATGATGAAACCCTGGTGATTGATCATACTCAAGACTATGTAAAATCAGTGGTTGAACTGTTAACAGAGAAACATAGGCAAATTGGAAAAAATTTCCAAGGGCCGGTTGCTCTTGGAAAAAAAGAATCCGGCTGCGTGCATGCTTTCAAAGAAGAAGAAGGAACATGCTGCTAAAAAAAAAAAATAAAAATAAAAAGAAAAATAAAGGGGGCGGCGGCCCTAATATCTCTGGGTAAATATAGTAAGAGAGAATATGGTGCTACACTTCCCTCTTATATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8030#0 CCGTGGAGCACTCGATCTCCAAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCT 60
consensus_8030#1 --------------------AAGCTCATCTAGCTCTTCTTGCTTCAGCTTCTTCCTCTCT 40
****************************************
consensus_8030#0 CTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGC 120
consensus_8030#1 CTCACAGTTCATCACACTTGGCTTTTTGAGTCAGGTGCTTGTTCTTCCTGCTGTTCTTGC 100
************************************************************
consensus_8030#0 CTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGA 180
consensus_8030#1 CTTGGCATATGCAGGACCAGCTGATCTGCAGCGGCTGCAGGCGCGTCGTCCAGTACAGGA 160
************************************************************
consensus_8030#0 GAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAG 240
consensus_8030#1 GAGGGGTCGCCGGCGTCTGCTGCCCGGGCTGCAACACGCTCACCGCCGTCAACCCGTCAG 220
************************************************************
consensus_8030#0 CGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACC 300
consensus_8030#1 CGGTGGCCGACATGTCGGAGCTCATCTGCAGCGGCTGCCCCACGCTGCTGTTCTACAACC 280
************************************************************
consensus_8030#0 GCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCA 360
consensus_8030#1 GCGGCGCCTCCAACATCCGCTGCCCCAGCTGCAACAGGCTCAACTCCACCAGATCAGCCA 340
************************************************************
consensus_8030#0 ACCAGATTGCACACCTGACATGCGGGCAGTGCCGGACGACTCTGATGCACCCACCTGGAG 420
consensus_8030#1 ACCAGATTGCACACCTGACATGCGGGCAGTGCCGGACGACTCTGATGCACCCACCTGGAG 400
************************************************************
consensus_8030#0 CCTCAACTGTGCAGTGTGCAACCTGCAGATATGTTAACCATGTCAGGGATGCTCGGCCTC 480
consensus_8030#1 CCTCAACTGTGC-GTGTGCAACCTGCAGATATGTTAACCATGTCANGGATGCTCGGCCTC 459
************ ******************************** **************
consensus_8030#0 AAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGA-GCAAT 539
consensus_8030#1 AAACTGGTCTTGTAGAGAATCCTAAGACACTGGATGATAAGGGCAAGCTGGTGACACATT 519
****** ********************************************** ** *
consensus_8030#0 GTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAAT 599
consensus_8030#1 GTGG--GTTGTGTGCACCTCATGGAAA-GATGATGAACAGGG-CTCATCTAGGG--TAAT 573
**** **** ************* ************** *********** ****
consensus_8030#0 CCCAAGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACAAAGCTAT 659
consensus_8030#1 CCCA-GGGTCTATG-ATGAT-GAAACCCT-GGTGA--TTG-ATCAT-ACT-CAAGACTAT 624
**** ********* ***** ** ***** **** *** ***** *** *** ****
consensus_8030#0 TGTTAAATCAAGTGTGTTTTGAAGCTTGATATAAACAAGAGAAAAACAATAGGGCAAAAA 719
consensus_8030#1 -GTAAAATCA---GTGGTTGAACTGTTAACAGAGA-AACATAGGCAAATTGGAAAAAATT 679
** ****** *** ** * ** * * * * ** * * * * * * ***
consensus_8030#0 ATGAAGAAAAAAATATATCCGAAATGTG-----CCATGTTTGTGCTTCTTTTGTGAGAAA 774
consensus_8030#1 TCCAAGGGCCGGTTGCTCTTGGAAAAAAAGAATCCGGCTGCGTGCATGCTTTCAAAGAAG 739
*** * * ** ** * **** * *** ****
consensus_8030#0 AAAAATGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTAGCAAAAAGGAATGG 834
consensus_8030#1 AAGAAGG--AACATGCTG-CTAAAAAAAAAAAATAAAAATAAAAAGAAAAATAAAGGGGG 796
** ** * ** ****** *** * ** *** * **
consensus_8030#0 AAATGAGATGAGCAGCATTGTGT---CCTGGAAAAAAAAA-------------------- 871
consensus_8030#1 CGGCGGCCCTAATATCTCTGGGTAAATATAGTAAGAGAGAATATGGTGCTACACTTCCCT 856
* * * * ** ** * * ** * * *
consensus_8030#0 ---------
consensus_8030#1 CTTATATCC 865
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||