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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1468 fasta sequence
[ACGCACGCGCCCCACCTGTTTCCCCCATTCCGCGTTCCGACGCCGAGTCCGGCGCATGGAGCGCGGACGGCGGCGGCGGTGGCGGCGGCATGGACGCGCTCCCCGACGGCGTGGTGCAGCACATCCTGTCGCAGCTCAGCAGCGCCCGCGACGTCGCGGCGTGCGCCGGCGTCTCGCGCGGCATGCGCGGCTGCGTGCCGTTCCTCCCGGCGCTCTACTTCCCGCGGGGCGCCTTCGACGCGGCGGGCGGCGCGGCCGCGGCCGACGACGCCATCGGGCGGATGGTGGAGGCCGCGGCGCGGCTGGAGGAGCTCGTCATCTACTGCCCCTTCTCCGCCGCGCGCCTGCCGCGCTGGCTCGCCGCGCGGAGCGCCTCGCTGCGGGTGCTCGAGCTGAGGATGGACTCCGCCGTGTCCTCCGGCGCGGGATCCGGACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGCTGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCAGCTGGAGCGGCTCCGCGTGCTGGAGATCGTCGGCGCCGCAGTGCGGGACGTCGCGGTGAACGGCGCCGTCGGCGCGTGCCCCAACCTCACCGACCTCGCCGCGCCACTCGTCGAGTCCCTTGAAATCCAGGGCTTCTGCTGGATCTCGCTGCAGGGAGGCATCAGACTCAAGCACCTTACAATTGCCAAGAACACTGGTACTGGGAGCGTGTACAATATAGAGATTGGGAAGCTCCCAGAGTTGGAGAAGCTCTCGCTGCGCGGTGTTCAGTGGAGCTGGGGAGCAATCAGCTCGGTGCTGCAGTGCGCATAGAGAGGTGAAGTATCTTGTGATGAAGATTGAGTTCTGCGGTGATCATGATACTCTCGAGCCATTCCCGGAGGTGGATCTTGTTGATTTCTTCAACAGCCACCCGAAGCTCATCAAGTTTGAGATCCATGGCGCCATGTTTGCTGCCATGTGCCAGAAGAACAGCCTGAAAAATTTGGATTCAAGGTTCTCGATCCCTTGCTTGGAGGAGGTTCTGATCACTGTGCGTTCACCTCTGAACGCTGAGCTGAAGCTGAACACTCTTGAGTCCCTAGTCAAGTACAGTCCCAGGATGCGGAGGATGGTCGTCAGGATTTCTCAGATGAAGAACTGCCATGGGTCCGCAGATGGCTTCTTCGAAGAGATTTGCAAGTTCATGTATATGAATAACGGGAGAGTGCGGATCGAATGAAAGAAGGAACAGCAGCAATCCTGAACTGAAGTCGAATTTGGGGCTTGGTTTGACTACCGTGAGTTGCAGCTGGACCAACAATAATTTTATTGAGTTATGTTCTTCATTTAAATTTTTTCAAGTTGTGCTATGTTGTTTATTGTTGTTCATCTGGTCTGGAGTGGAGTGAGTGAATGTTAGTTCATCATGCTTATATTGTACTTTGAAGTTTGAATCAGTCTAAAAT]
[+] EMBL AK109599 [ACGCACGCGCCCCACCTGTTTCCCCCATTCCGCGTTCCGACGCCGAGTCCGGCGCATGGAGCGCGGACGGCGGCGGCGGTGGCGGCGGCATGGACGCGCTCCCCGACGGCGTGGTGCAGCACATCCTGTCGCAGCTCAGCAGCGCCCGCGACGTCGCGGCGTGCGCCGGCGTCTCGCGCGGCATGCGCGGCTGCGTGCCGTTCCTCCCGGCGCTCTACTTCCCGCGGGGCGCCTTCGACGCGGCGGGCGGCGCGGCCGCGGCCGACGACGCCATCGGGCGGATGGTGGAGGCCGCGGCGCGGCTGGAGGAGCTCGTCATCTACTGCCCCTTCTCCGCCGCGCGCCTGCCGCGCTGGCTCGCCGCGCGGAGCGCCTCGCTGCGGGTGCTCGAGCTGAGGATGGACTCCGCCGTGTCCTCCGGCGCGGGATCCGGACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGCTGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCAGCTGGAGCGGCTCCGCGTGCTGGAGATCGTCGGCGCCGCAGTGCGGGACGTCGCGGTGAACGGCGCCGTCGGCGCGTGCCCCAACCTCACCGACCTCGCCGCGCCACTCGTCGAGTCCCTTGAAATCCAGGGCTTCTGCTGGATCTCGCTGCAGGGAGGCATCAGACTCAAGCACCTTACAATTGCCAAGAACACTGGTACTGGGAGCGTGTACAATATAGAGATTGGGAAGCTCCCAGAGTTGGAGAAGCTCTCGCTGCGCGGTGTTCAGTGGAGCTGGGGAGCAATCAGCTCGGTGCTGCAGTGCGCATAGAGAGGTGAAGTATCTTGTGATGAAGATTGAGTTCTGCGGTGATCATGATACTCTCGAGCCATTCCCGGAGGTGGATCTTGTTGATTTCTTCAACAGCCACCCGAAGCTCATCAAGTTTGAGATCCATGGCGCCATGTTTGCTGCCATGTGCCAGAAGAACAGCCTGAAAAATTTGGATTCAAGGTTCTCGATCCCTTGCTTGGAGGAGGTTCTGATCACTGTGCGTTCACCTCTGAACGCTGAGCTGAAGCTGAACACTCTTGAGTCCCTAGTCAAGTACAGTCCCAGGATGCGGAGGATGGTCGTCAGGATTTCTCAGATGAAGAACTGCCATGGGTCCGCAGATGGCTTCTTCGAAGAGATTTGCAAGTTCATGTATATGAATAACGGGAGAGTGCGGATCGAATGAAAGAAGGAACAGCAGCAATCCTGAACTGAAGTCGAATTTGGGGCTTGGTTTGACTACCGTGAGTTGCAGCTGGACCAACAATAATTTTATTGAGTTATGTTCTTCATTTAAATTTTTTCAAGTTGTGCTATGTTGTTTATTGTTGTTCATCTGGTCTGGAGTGGAGTGAGTGAATGTTAGTTCATCATGCTTATATTGTACTTTGAAGTTTGAATCAGTCTAAAAT]
consensusID : consensus_804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[ACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGCTGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCANCTGGAGCGGCTCCGCGTGCTGGAGATCGTCGGCGCCGCAGTGCGNGACGTCGCGGTGAACGGCGCCGTCGCGTTGCCCCAACCTCACCGACCTCGCCCTCATCGGGTGCGATGCTCCGGCGCGGTGGCCATGACGCTCCCCCTGG]
[+] EMBL C74769 [ACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGCTGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCANCTGGAGCGGCTCCGCGTGCTGGAGATCGTCGGCGCCGCAGTGCGNGACGTCGCGGTGAACGGCGCCGTCGCGTTGCCCCAACCTCACCGACCTCGCCCTCATCGGGTGCGATGCTCCGGCGCGGTGGCCATGACGCTCCCCCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_804#0 ACGCACGCGCCCCACCTGTTTCCCCCATTCCGCGTTCCGACGCCGAGTCCGGCGCATGGA 60
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GCGCGGACGGCGGCGGCGGTGGCGGCGGCATGGACGCGCTCCCCGACGGCGTGGTGCAGC 120
consensus_804#1 ------------------------------------------------------------
consensus_804#0 ACATCCTGTCGCAGCTCAGCAGCGCCCGCGACGTCGCGGCGTGCGCCGGCGTCTCGCGCG 180
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GCATGCGCGGCTGCGTGCCGTTCCTCCCGGCGCTCTACTTCCCGCGGGGCGCCTTCGACG 240
consensus_804#1 ------------------------------------------------------------
consensus_804#0 CGGCGGGCGGCGCGGCCGCGGCCGACGACGCCATCGGGCGGATGGTGGAGGCCGCGGCGC 300
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GGCTGGAGGAGCTCGTCATCTACTGCCCCTTCTCCGCCGCGCGCCTGCCGCGCTGGCTCG 360
consensus_804#1 ------------------------------------------------------------
consensus_804#0 CCGCGCGGAGCGCCTCGCTGCGGGTGCTCGAGCTGAGGATGGACTCCGCCGTGTCCTCCG 420
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GCGCGGGATCCGGACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGC 480
consensus_804#1 -------------ACACCTGGACTGCATCGGGGCCGTCGCGAACCTCGAGGAGCTGAGGC 47
***********************************************
consensus_804#0 TGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCAGCTGGAGCGGCTCCGCGTGC 540
consensus_804#1 TGTGGGGGCTCACGATGACGCGCGCCCCGGCGTGGGGCCANCTGGAGCGGCTCCGCGTGC 107
**************************************** *******************
consensus_804#0 TGGAGATCGTCGGCGCCGCAGTGCGGGACGTCGCGGTGAACGGCGCCGTCGGCGCGTGCC 600
consensus_804#1 TGGAGATCGTCGGCGCCGCAGTGCGNGACGTCGCGGTGAACGGCGCCGTCG-CGT-TGCC 165
************************* ************************* ** ****
consensus_804#0 CCAACCTCACCGACCTCGCCGCGCCACTCGTCGAGTCCCTTGAAATCCAGGGCTTCTGCT 660
consensus_804#1 CCAACCTCACCGACCTCGCC------CTCATCGGGTGCGATG--CTCCGGCGCGGTGGCC 217
******************** *** *** ** * ** *** * ** **
consensus_804#0 GGATCTCGCTGCAGGGAGGCATCAGACTCAAGCACCTTACAATTGCCAAGAACACTGGTA 720
consensus_804#1 ATGACGCTCCCCCTGG-------------------------------------------- 233
* * * * **
consensus_804#0 CTGGGAGCGTGTACAATATAGAGATTGGGAAGCTCCCAGAGTTGGAGAAGCTCTCGCTGC 780
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GCGGTGTTCAGTGGAGCTGGGGAGCAATCAGCTCGGTGCTGCAGTGCGCATAGAGAGGTG 840
consensus_804#1 ------------------------------------------------------------
consensus_804#0 AAGTATCTTGTGATGAAGATTGAGTTCTGCGGTGATCATGATACTCTCGAGCCATTCCCG 900
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GAGGTGGATCTTGTTGATTTCTTCAACAGCCACCCGAAGCTCATCAAGTTTGAGATCCAT 960
consensus_804#1 ------------------------------------------------------------
consensus_804#0 GGCGCCATGTTTGCTGCCATGTGCCAGAAGAACAGCCTGAAAAATTTGGATTCAAGGTTC 1020
consensus_804#1 ------------------------------------------------------------
consensus_804#0 TCGATCCCTTGCTTGGAGGAGGTTCTGATCACTGTGCGTTCACCTCTGAACGCTGAGCTG 1080
consensus_804#1 ------------------------------------------------------------
consensus_804#0 AAGCTGAACACTCTTGAGTCCCTAGTCAAGTACAGTCCCAGGATGCGGAGGATGGTCGTC 1140
consensus_804#1 ------------------------------------------------------------
consensus_804#0 AGGATTTCTCAGATGAAGAACTGCCATGGGTCCGCAGATGGCTTCTTCGAAGAGATTTGC 1200
consensus_804#1 ------------------------------------------------------------
consensus_804#0 AAGTTCATGTATATGAATAACGGGAGAGTGCGGATCGAATGAAAGAAGGAACAGCAGCAA 1260
consensus_804#1 ------------------------------------------------------------
consensus_804#0 TCCTGAACTGAAGTCGAATTTGGGGCTTGGTTTGACTACCGTGAGTTGCAGCTGGACCAA 1320
consensus_804#1 ------------------------------------------------------------
consensus_804#0 CAATAATTTTATTGAGTTATGTTCTTCATTTAAATTTTTTCAAGTTGTGCTATGTTGTTT 1380
consensus_804#1 ------------------------------------------------------------
consensus_804#0 ATTGTTGTTCATCTGGTCTGGAGTGGAGTGAGTGAATGTTAGTTCATCATGCTTATATTG 1440
consensus_804#1 ------------------------------------------------------------
consensus_804#0 TACTTTGAAGTTTGAATCAGTCTAAAAT 1468
consensus_804#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||