These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2101 fasta sequence [AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGATTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTCTACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTCTACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCAGGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCAGTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAGGAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTTGCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCTGATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGTCTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAGGCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTTTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAATACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTATGGATAGAAAGAAAGGAACCTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCTATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATGAGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGACATA] [+] EMBL AK100463 [AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGATTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTCTACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTCTACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCAGGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCAGTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAGGAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTTGCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCTGATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGTCTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAGGCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGT ] [+] EMBL CB659032 [ GCCGCCTTGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCTCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCATAGATTGCAAGGTGCTGGATAAGATGGTCAATAAGCAGGCAGAGCAGGGTGGCCTCTACTCCGCCATCTGCGCCACGCCGGCGGTGACTCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTATGGTGGTGGTATATACAAATGCAGTGACCAGCCTAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCACGAC ] [-] EMBL CB619470 [ AGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTTTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAATACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTA ] [-] EMBL CB659033 [ TGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTCTTACAGTTACCTGGATAGATCTTGACTCTTGTTTCTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTCTCAAAGGCACAGGATCTGAATCCTATCATGTGGAACTAATACGATCTGAGATAGAGGGACTGCATTGAGAACCTGTTTGATGGATAGAAAGAAAGGAACCTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCTATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATGAGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGACATA] consensusID : consensus_8078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [AGGCACCCTTCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAGCTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG] [+] EMBL CB619469 [AGGCACCCTTCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAGCTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8078#0 AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGA 60 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTC 120 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCT 180 consensus_8078#1 ----------------------------------AGGCACCCTTCACGAAGTCGCCACCT 26 ****** * **************** consensus_8078#0 CGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCC---TTACCTACGGGGAT 237 consensus_8078#1 CGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGAT 86 ******************************************* ************** consensus_8078#0 AGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCG 297 consensus_8078#1 AGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCG 146 ************************************************************ consensus_8078#0 TGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGG 357 consensus_8078#1 TGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGG 206 ************************************************** ********* consensus_8078#0 GTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTG 417 consensus_8078#1 GTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAG 266 ************************************* ***** ** * ***** *** * consensus_8078#0 CTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGT 477 consensus_8078#1 CTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG-------------------- 306 *** **** ************ * * * *** consensus_8078#0 GGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGAC 537 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAAC 597 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTC 657 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGC 717 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTG 777 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 AACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATT 837 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCA 897 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCA 957 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAG 1017 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTT 1077 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCT 1137 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGT 1197 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAG 1257 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCC 1317 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACT 1377 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCC 1437 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAA 1497 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCAT 1557 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAG 1617 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 GAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGT 1677 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 ACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGT 1737 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAA 1797 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAA 1857 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 TACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTATGGATAGAAAGAAAGGAAC 1917 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCT 1977 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 ATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATG 2037 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 AGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGA 2097 consensus_8078#1 ------------------------------------------------------------ consensus_8078#0 CATA 2101 consensus_8078#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||