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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1550 fasta sequence
[TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATG-AAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTC-TTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTTGAAATGCTATTGCTGTG]
[+] EMBL AK119646 [TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATG AAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTC TTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTG ]
[+] EMBL AK105260 [ GCGGCGTTCGCCGCAATCCCTCCTGCGCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCGAGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGCCGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCTCCGCCGCCGCCGCCGCCGCCGCAGCCTGCGAAGGAGCCACCGCCGCCTACCAAGCCGAAGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCCGCAGAAGCCACCGCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGCGGCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTTCGTCACCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACCCGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCAAGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGTGTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGCTGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAACCTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGTCGCGTTGCTTCAAAATGAAAAAAAAAAATCCAGTTCGTCTTACCCTGTACATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTCTTTTTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTTGCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGATGGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCACTGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTTGAAATGCTATTGCTGTG]
consensusID : consensus_8079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence
[AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAACCTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAAAAAAAAAAAA]
[+] EMBL C99361 [AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAACCTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAAAAAAAAAAAA]
[+] EMBL AA750828 [ TTCATGCTAGTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGAAGAATGGATTACAGTAGACTT CCCAACTTAAGAGGGAATTGAAGCCAATAATC ]
consensusID : consensus_8079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[GCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCNCCGCCGCCGCCGCCGCCGCCGCAGCCNGCGAAGGAGCCACCGCCGCCGCAGAAGCCACCGCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGCGNCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTT]
[+] EMBL AU162217 [GCACGCCGCCGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCGACGACCTCCTCTACGGCCAGCACCACGCCCTACCCCATCCNCCGCCGCCGCCGCCGCCGCCGCAGCCNGCGAAGGAGCCACCGCCGCCGCAGAAGCCACCGCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGCGNCAACGGCAACCCACCACCATCGCCACAGCTGCAGCTCTCCACCGTCATCGCCGACGTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8079#0 TCTCTCTCTTCCCCCAAAATCCCCCACATCGTCGGCGGCGTTCGCCGCAATCCCTCCTGC 60
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GCCGCCGCGGCGACCTCCTCCCTCCCCTCGCCGTCGTCTCCAACGCGGGCGCCCGAATCG 120
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 AGATTGGGGTTTTGATGACGGGGAATTGATCTCGATCGTTGTCGGAGCCGGGGGAGATGC 180
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 CGTGCTGCAGCGCGGTGCTGAGCGCGGCGGCGGCGGCGGCCGCGGCAAGCCGCACGCCGC 240
consensus_8079#2 ---------------------------------------------------GCACGCCGC 9
consensus_8079#1 ----------AGGCCCCCTTNTGGAAAGTTTAGGGACAAGGCCCTCCGGGNTCTCTTAAC 50
* * *
consensus_8079#0 CGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCG 300
consensus_8079#2 CGTGGCTGCACCGCCTCCACGCCAAAGGGGGCCTGTCTTTCCCCTCCAACCTCCACATCG 69
consensus_8079#1 CTTGGGGATCCCACCAAGNTGAAGAGGAGGGCCGG--CTTGGTCTCCAAGATTCAGAGGG 108
* *** ** ** * * * ***** * ** ****** * ** * *
consensus_8079#0 ACGACCTCCTCTACGGCCAGCACCACGCC----CTACCCCATCCTCCGCCGCCGCCGCCG 356
consensus_8079#2 ACGACCTCCTCTACGGCCAGCACCACGCC----CTACCCCATCCNCCGCCGCCGCCGCCG 125
consensus_8079#1 ACAGGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTA 168
** * *** * * * *** **** * **
consensus_8079#0 CCGCCGCAGCCTG--CGAAGGAGCC---------------ACCGCCGCCTACCAAGCCGA 399
consensus_8079#2 CCGCCGCAGCCNG--CGAAGGAGCC---------------ACCGCCGCC----------- 157
consensus_8079#1 GTAGTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAG 228
* ** * *** ***** * * * *
consensus_8079#0 AGCATCCGAAGCCCAAGCAGCAGCAGCATCCACCGCCGCCGCCGCC-GCAGA-AGCCACC 457
consensus_8079#2 -----------------------------------------------GCAGA-AGCCACC 169
consensus_8079#1 GTCCTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCT 288
**** ** *
consensus_8079#0 GCAAGGTAGCACCAATCTCTCCCTACCAAACCCTAGCGGAAGCGGAAGC-GGCAACGGCA 516
consensus_8079#2 GCAAGGNAGCACCAATCTCTCCCNACCAAACCCNAGCGGAAGCGNAAGC-GNCAACGGCA 228
consensus_8079#1 AGAAGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCA 348
*** * * * * * ** *** ** ** * **** ** ***
consensus_8079#0 ACCCACCACCATCGCCACA--GCTGCAGCTCTCCACCGTCATCGCCGA-CGTCTTCGTCA 573
consensus_8079#2 ACCCACCACCATCGCCACA--GCTGCAGCTCTCCACCGTCATCGCCGA-CGTCTT----- 280
consensus_8079#1 TCTTGACAACATTGCCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTAAAAA 408
* ** *** *** * *** ** * * * * ******
consensus_8079#0 CCCCCTCCTCCGCTCCTCCGCTCATCGCGCCGATCAAGGCCTTCCGCAAGCAGAACCACC 633
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 AAAAAAAAAA-------------------------------------------------- 418
consensus_8079#0 CGCGCCCTAGGCCCGACAAGGCCTCCCGCCCCAGCAAGGAGAACAAGGACAAGGCCTCCA 693
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 AGGTCAAGGTCAAGAAGCGCCGCCGCTCCGACCGCGCCGCCGATGGCGACGGCGAGAGGT 753
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GTAGCAGGACCGAGGTCACCGTCATCGACACCAGCACCGATGGGTGGAAGGCGGCGAAGC 813
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 TGCTCCTCCGGAGAGGCGCCGTCTGGAAGGTGAGGGACAAGGCCTCCGGGGTCTCTGAAC 873
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 CTGAGGATCCCACCAAGATGAAGAGGAGGGCCGGCTTGGTCTCCAAGATTCAGAGGGACA 933
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GGGAGAAGCAGAAGCAGAAGGAGAAAGAAGCAACCTCATCGGGAAACATTCATGCTAGTA 993
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GTGGAGATGGGATGAAAGAGCCTGATGGTCCTATTCAAGCACTGAAAAGATCTAGAGGTC 1053
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 CTGAGCCAGAACCAGAAATTATAGCGCTTCTTCATTGAAAAACTACAGATAGAGGCTAGA 1113
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 AGAATGGATTACAGTAGACTTCCCCAACTTAAGAGGGAATTGAAGCCAATAATCGCATCT 1173
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 TGACAACATTGTCGCGTTGCTTCAAAATGAAAAAAAAAATCCAGTTCGTCTTACCCTGTA 1233
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 CATCTGTTGGTGTTTCTGATTGATGCCTGTTAGATATTCCAATTGTTGATATCTGGTCTT 1293
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 TTTTTTTTAGCGTATCATGTTTTAAAATGACACCTTGCTAGGTCTTCTAAAAATGTTTTT 1353
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GCTGTTGGTGGGGGATTGATTCATTTAGTTTGTTTGACTCCTCATGCACTAAACTAAGAT 1413
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GGGTAGTGTAAATGTGATATTTATGTTGGTAGCCTAGTTGCTGCATAATTTAGTTTCCAC 1473
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 TGTTGGCATTTGGGTAACTGTTTCGTGTAAGGATGGAGATTCATCCAAATGGTAAAGGTT 1533
consensus_8079#2 ------------------------------------------------------------
consensus_8079#1 ------------------------------------------------------------
consensus_8079#0 GAAATGCTATTGCTGTG 1550
consensus_8079#2 -----------------
consensus_8079#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||