These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 937 fasta sequence [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT-GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA] [+] EMBL AK066511 [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCT ] [+] EMBL AU082882 [ ATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAA ] [+] EMBL AU082883 [ AGTTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA] [+] EMBL CB685209 [ TATACATTAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTG ] consensusID : consensus_8089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG] [+] EMBL CA758598 [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8089#0 CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTC 60 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 CTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTA 120 consensus_8089#1 ------------------------------------------------TCCCGATGGCTA 12 ************ consensus_8089#0 TGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 180 consensus_8089#1 TGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 72 ************* ********************************************** consensus_8089#0 AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGG 240 consensus_8089#1 AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCG---- 128 ******************************************************** consensus_8089#0 CGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 300 consensus_8089#1 --------GAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 180 **** *********************************************** consensus_8089#0 TGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCG 360 consensus_8089#1 TGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG---- 236 ***************** ************************ ************* consensus_8089#0 ACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGT 420 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 GGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGG 480 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 TAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCA 540 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 AAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTG 600 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 CTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGG 660 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 TTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTT 720 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 CATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTC 780 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 ATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTA 840 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 ACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCT 900 consensus_8089#1 ------------------------------------------------------------ consensus_8089#0 CTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA 937 consensus_8089#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||