These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 824 fasta sequence [TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAACGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGC-AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCCGAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAGCTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA] [+] EMBL CB679603 [TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAACGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGC AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCCGAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTC ] [-] EMBL AK058766 [ cattCAATTCAATGTTTTTGATTGAAAGAATAAATAATCTGAATACAGTGTGCAGTCATTGGCAGAGCTACTCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCTAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCGACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTCCCCAGC AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCA ] [-] EMBL OSC21631 [ TTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGCAAGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAAACTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCA ] [-] EMBL BI306663 [ TAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCC TGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGT AAGCTCCGAGCCACCCANAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAGCTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA] consensusID : consensus_8098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [AANTTTTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATCCTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCACCAGCTCCCGGGCCG] [-] EMBL AU082909 [AANTTTTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATCCTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCACCAGCTCCCGGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8098#0 TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAA 60 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 CGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAAT 120 consensus_8098#1 -AANTT----TTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAAT 55 * ** * ********************************************* consensus_8098#0 ACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATC 180 consensus_8098#1 ACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATC 115 *********************************************** ************ consensus_8098#0 CTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGT 240 consensus_8098#1 CTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGT 175 ********************** ******************************** * ** consensus_8098#0 CAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGCAGCAC 300 consensus_8098#1 CAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCAC 235 ***************************** ** ****** ******************** consensus_8098#0 CAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAG 360 consensus_8098#1 CAGCTCCCGGGCCG---------------------------------------------- 249 ************** consensus_8098#0 CTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACA 420 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 GTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTA 480 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 ATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCA 540 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 CTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCC 600 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 GAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCC 660 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 GGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGC 720 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 AGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAG 780 consensus_8098#1 ------------------------------------------------------------ consensus_8098#0 CTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA 824 consensus_8098#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||