These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1632 fasta sequence [AGAGAGCTGGAAATGGATCCCCTTTAAAAGCCGTTGCGTTGGCTCTGCCGCCTTGGCAACAACATCCAATTTCCAAACCAAGAGAGAAGCAGCAGCGATGGCGATGCGGCAGGGAGCGCTGCGAGGCCCCTCCGATTACTCCCAGGAGCCCACCCGCCACCCCTCCCTGCGCATCAACGCCAAGGAGCCGTTCAATGCGGAGGCGACGAGGCGGGACCTCGTGGCGTCCTACATCACCCCCGTGGATCTCTTCCTCAAGAGGAACCATGGCCCCATCCCCATCCTCCACGACATCGACAGCTACTATGTGACGGTTGCCGGTCTGATAGAGAGGCCAGCGAAGCTTTATCTGAATGACATCAAGAAGCTGCCCAAGTACAATGTCACTGCCACTCTGCAGTGTGCAGGGAACAGGAGG-ACCGAAATGA-GCAA-GAGCAGGAAGGTGA-GAGGCGTCGGA-TGGGATGTCTGCGCTCTCGGGAATGCGACATGGGGAGGAGCTAAGTTATCTGATGTCCTTCAGCTCATTGGTGTGCCATATCATACTGAAATTACTCCATCAGGAGGAAAGCATGTTGAGTTCACTAGTGTAGATCAGTGCCCTGAGGAAAAAGGTGGCCCTTACAAAGCATCGATTTCTTTAGGCCATGCAACAAATCCTGCAGCAGATGTACTGGTTGCATATGAAATGAATGGTGAGGTGCTCAAGCGTGATCATGGATACCCTCTCCGTGTCGTAGTTCCAGGTGTGATTGGTGCTCGTTCAGTCAAATGGTTGGACAGAATTGACATAATTGAGGAAGAGTGTCAGGGTTTCTTTATGCAAAAGGATTACAAAATGTTCCCTCCATCTGTTGATTGGGACAATATTGTGTGGTCAACCAGGAAGCCCCAAATGGACTACCCAGTTCAGTCTGCCATATGCTCTTTGGAAGACA-CAAATG-CCATCATTCCAGGAGAAGTGACTGTCACTGGATATGCGTTGTCAGGAGGCGGCCGAGGTATTGAGAGGGTGGATATATCCACTGACGGTGGCAAGACTTGGTTCGGTGCTGTCCGGTACCAAAAGGAAGGTGTACCATACGTCGCAGGTGACATAAGTAGTGACAAGTGGGCTTGGGTTCTCTTCAAGACTGTTATCGATGTGAAAGGTGACACGGAGGTTATCGTAAAAGCGGTTGATTCCAGTGCAAATGTGCAACCTGAGAGCGTGGAGACCATATGGAACCTTAGAGGGATCCTGAACACCTGCTGGCACCGTGTTCGCCTTCTGACAATACACAACCTTAGAAGCCTTTTGTGATGATCCTACACATACACCTAACTAGTATTATCTCTTTAAATTTACCGCTCTATGTTGCACTGTCGTTCCGCTTTCGGATCTGCATTGGAGAAAAAGAGTCAAGAGGGACCAATAATATAATGCTGGCTGACTTGCTTGGATGCTGGAATAAAATCCCGTGCCACCTTGTTATCCTATTCTTTTTGAGTAAGAAATATGTGTGTATGAAATAATGGGCACAGGCTAGATCAACCTCATTTAAGAGTGCAAAACAGTTTGCCTCTTTGTTTTATTTGGATGCAACAATTGGTCAACATAAAAAAAAAAGTTTCAGATTTGTGTAAAAAAAAAAA] [+] EMBL AK069818 [AGAGAGCTGGAAATGGATCCCCTTTAAAAGCCGTTGCGTTGGCTCTGCCGCCTTGGCAACAACATCCAATTTCCAAACCAAGAGAGAAGCAGCAGCGATGGCGATGCGGCAGGGAGCGCTGCGAGGCCCCTCCGATTACTCCCAGGAGCCCACCCGCCACCCCTCCCTGCGCATCAACGCCAAGGAGCCGTTCAATGCGGAGGCGACGAGGCGGGACCTCGTGGCGTCCTACATCACCCCCGTGGATCTCTTCCTCAAGAGGAACCATGGCCCCATCCCCATCCTCCGCGACATCGACAGCTACTATGTGACGGTTGCCGGTCTGATAGAGAGGCCAGCGAAGCTTTATCTGAATGACATCAAGAAGCTGCCCAAGTACAATGTCACTGCCACTCTGCAGTGTGCAGAGAACAGGAGG ACCGAAATGA GCAA GAGCAGGAAGGTGA GAGGCGTCGGA TGGGATGTCTGCGCTCTCGGGAATGCGACATGGGGAGGAGCTAAGTTATCTGATGTCCTTCAGCTCATTGGTGTGCCATATCATACTGAAATTACTCCATCAGGAGGAAAGCATGTTGAGTTCACTAGTGTAGATCAGTGCCCTGAGGAAAAAGGTGGCCCTTACAAAGCATCGATTTCTTTAGGCCATGCAACAAATCCTGCAGCAGATGTACTGGTTGCATATGAAATGAATGGTGAGGTGCTCAAGCGTGATCATGGATACCCTCTCCGTGTCGTAGTTCCAGGTGTGATTGGTGCTCGTTCAGTCAAATGGTTGGACAGAATTGACATAATTGAGGAAGAGTGTCAGGGTTTCTTTATGCAAAAGGATTACAAAATGTTCCCTCCATCTGTTGATTGGGACAATATTGTGTGGTCAACCAGGAAGCCCCAAATGGACTACCCAGTTCAGTCTGCCATATGCTCTTTGGAAGACA CAAATG CCATCATTCCAGGAGAAGTGACTGTCACTGGATATGCGTTGTCAGGAGGCGGCCGAGGTATTGAGAGGGTGGATATATCCACTGACGGTGGCAAGACTTGGTTCGGTGCTGTCCGGTACCAAAAGGAAGGTGTACCATACGTCGCAGGTGACATAAGTAGTGACAAGTGGGCTTGGGTTCTCTTCAAGACTGTTATCGATGTGAAAGGTGACACGGAGGTTATCGTAAAAGCGGTTGATTCCAGTGCAAATGTGCAACCTGAGAGCGTGGAGACCATATGGAACCTTAGAGGGATCCTGAACACCTGCTGGCACCGTGTTCGCCTTCTGACAATACACAACCTTAGAAGCCTTTTGTGATGATCCTACACATACACCTAACTAGTATTATCTCTTTAAATTTACCGCTCTATGTTGCACTGTCGTTCCGCTTTCGGATCTGCATTGGAGAAAAAGAGTCAAGAGGGACCAATAATATAATGCTGGCTGACTTGCTTGGATGCTGGAATAAAATCCCGTGCCAC ] [+] EMBL AU173155 [ AGCAGCAGCGATGGCGATGCGGCAGGGAGCGCTGCGAGGCCCCTCCGATTACTCCCAGGAGCCCACCCGCCACCCCTCCCTGCGCATCAACGCCAAGGAGCCGTTCAATGCGGAGGCGACGAGGCGGGACCTCGTGGCGTCCTACATCACCCCCGTGGATCTCTTCCTCAAGAGGAACCATGGCCCCATCCCCATCCTCCACGACATCGACAGCTACTATGTGACGGTTGCCGGTCTGATAGAGAGGCCAGCGAAGCTTTATCTGAATGACATCAAGAAGCTGCCCAAGTACAATGTCACTGCCACTCTGCAGTGTGCAGGGAACAGGAGG ACCGAAATGA GCAA GAGCAGGAAGGTGA GAGGCGTCGGA TGGGATGTCTGCGCTCTCGGGAATGCGACATGGGGAGGAGCTAAGTTATCTGATGTCCTTCAGCT ] [+] EMBL AU062489 [ CAGCANTGGCNATGCGGCANGGAGCNCTGCANGGCCCCTCCAATTACTCCCAGGANCCCACCCGCCACCCCTCCCTGCGCATCAACGCCAAGGAGCCGTTCAATGCGGAGGCNACGAGGCGGGACCTCGTGGCGTCCTACATCACCCCCGTGGATCTNTTCCTCAAGAGGAACCATGGCCCCATCCCCATCCTCCACGACATCGACAGCTACTATGTGACGGTTGCCGGTNTGATAGAGAGGCCAGCG ANTTTTATCTGAATGACATCAAGAAGCTGCCCAAGTACAATGTCACNGCCACTCTGCAGTGTGCAGGGAACAGGAGGAACCGAAATGANGCAAGGAGCAGGAAGGTTAGGAGGCGTCGGATTGGGA ] [+] EMBL AU092200 [ CATATGCTCTTTGGAAGACACCAAATGCCCATCATTCCAGGAGAAGTGACTGTCACTGGATATGCGTTGTCAGGAGGCGGCCGAGGTATTGAGAGGGTGGATATATCCACTGACGGTGGCAAGACTTGGTTCGGTGCTGTCCGGTACCAAAAGGAAGGTGTACCATACGTCGCAGGTGACATAAGTAGTGACAAGTGGGCTTGGGTTCTCTTCAAGACTGTTATCGATGTGAAAGGTGACACGGAGGTTATCGTAAAAGCGGTTGATTCCAGTGCAAATGTGCAACCTGAGAGCGTGGAGACCATATGGAACCTTAGAGGGATCCTGAACACCTGCTGGCACCGTGTTCGCCTTCTGACAATACACAACCTTAGAAGCCTTTTGTGATGATCCTACACATACACCTAACTAGTATTATCTCTTTAAATTTACCGCTCTATGTTGCACTGTCGTTCCGCTTTCGGATCTGCATTGGAGAAAAAGAGTCAAGAGGGACCAATAATATAATGCTGGCTGACTTGCTTGGATGCTGGAATAAAATCCCGTGCCACCTTGTTATCCTATTCTTTTTGAGTAAGAAATATGTGTGTATGAAATAATGGGCACAGGCTAGATCAACCTCATTTAAGAGTGCAAAACAGTTTGCCTCTTTGTTTTATTTGGATGCAACAATTGGTCAACATAAAAAAAAAA ] [+] EMBL AU173156 [ AGAGCGTGGAGACCATATGGAACCTTAGAGGGATCCTGAACACCTGCTGGCACCGTGTTCGCCTTNTGACAATACACAACCTTAGAAGCCTTTTGTGATGATCCTACACATACACCTAACTAGTATTATCTCTTTAAATTTACCGCTCTATGTTGCACTGTCGTTCCGCTTTCGGATCTGCATTGGAGAAAAAGAGTCAAGAGGGACCAATAATATAATGCTGGCTGACTTGCTTGGATGCTGGAATAAAATCCCGTGCCNCCTTGTTATCCTATTCTTTTTGAGTAAGAAATATGTGTGTATGAAATAATGGGCACAGGCTAGATCAACCTCATTTAAGAGTGCAAAACAGTTTGCCTCTTTGTTTTATTTGGATGCAACAATTGGTCAACATACATGGAATGGTTTCAGATTTGTGTAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||