These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1080 fasta sequence [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA] [+] EMBL AK067666 [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAA ] [-] EMBL CB642788 [ ATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA] consensusID : consensus_8125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 987 fasta sequence [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK104988 [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAAAAAAAAAAAAAAAAGGCCACAT] consensusID : consensus_8125#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 833 fasta sequence [TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCAAACTATACTATCAAATTATGAACTATCAGAACTGTTCAATTTTCAACCATGGTACAGATAGTTTTGGTTGACATAACATTGATGGTGTGTGGCCTGAGGCTGAGACAGTTTTTTTTGGGACTCAGCTAATCCTCTTGATCTCTGGCATAGCTGAACACACAATTTTATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTTTCCATGGAGAGCTCATACTACATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTTAATTGGGTCTGACATATATGACATTTCTGCTTCTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGAT-GCTCAGGAGTTGCT-GCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCT-CAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAA-CA-GTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGT-AGTTCCTAACGCTGT-TTCTGTACATTGT-TGT-ACTACCTACCCT-ATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA] [-] EMBL CB671172 [TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCAAACTATACTATCAAATTATGAACTATCAGAACTGTTCAATTTTCAACCATGGTACAGATAGTTTTGGTTGACATAACATTGATGGTGTGTGGCCTGAGGCTGAGACAGTTTTTTTTGGGACTCAGCTAATCCTCTTGATCTCTGGCATAGCTGAACACACAATTTTATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTTTCCATGGAGAGCTCATACTACATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTTAATTGGGTCTGACATATATGACATTTCTGCTTCTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGAT GCTCAGGAGTTGCT GCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCT CAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAA CA GTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGT AGTTCCTAACGCTGT TTCTGTACATTGT TGT ACTACCTACCCT ATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA] [+] EMBL BI808948 [ atgCCCCCTGGCCTGTCCCAGATGGCTCAGGAGTTGCTGGCAACAGTGCCTCGGGTTTTCGACTCGCAACGTCGACGGCTGCCCGCACTTGATCGCAGCCTTCAAGACCTGGTTCAGGCGTGCTGGCCGGGCTCCTACAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACCACGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTGAGTTCCTAACGCTGTGTTCTGTACCTTGTGTGTGACTACCTACCCTGATCTATTGCCCTGTAAGGTATATGATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8125#0 GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGG 60 consensus_8125#1 GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGG 60 consensus_8125#2 ------------------------------------------------------------ consensus_8125#0 GCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTC 120 consensus_8125#1 GCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTC 120 consensus_8125#2 ------------------------------------------------------------ consensus_8125#0 CCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAA 180 consensus_8125#1 CCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAA 180 consensus_8125#2 -------TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCA-AACT--ATACTATCAA 50 * * ** *** * * * ** *** ** * *** **** consensus_8125#0 GGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCG 240 consensus_8125#1 GGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCG 240 consensus_8125#2 A----TTATGAACTATCAGAACTGTTCAATTTTCAA--CCATGGTACAGATAGTTTTGGT 104 * *** * * * * * ***** * *** * * * * * consensus_8125#0 GGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTG 300 consensus_8125#1 GGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTG 300 consensus_8125#2 TGACATAACATTGATGGTG----TGTGGCCTGAGGC--------TGAGACAGTTTTTTTT 152 *** * * ** * ** ** * * * ** ******* ** * * consensus_8125#0 GCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGA 360 consensus_8125#1 GCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGA 360 consensus_8125#2 GGGACTC-AGCTAATCCTCT---------TGATCTCTGGCATAGCTGAACACACAATTTT 202 * ** ** ** ** ** * * * * * * * * consensus_8125#0 GCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAA 420 consensus_8125#1 GCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAA 420 consensus_8125#2 ATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTT---TCCATGGAGAGC 259 * ** * ** * *** * ** *** * * **** consensus_8125#0 TATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGT 480 consensus_8125#1 TATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGT 480 consensus_8125#2 TCATACTAC----ATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTT---AATTGGGT 312 * **** * ** * * * * ** * ** *** **** *** consensus_8125#0 TGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 540 consensus_8125#1 TGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 540 consensus_8125#2 C-TGACATATATGACATTTCTGCTTC-TCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 370 *** **** * * * ** ********************************* consensus_8125#0 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 600 consensus_8125#1 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 600 consensus_8125#2 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 430 ************************************************************ consensus_8125#0 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 660 consensus_8125#1 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 660 consensus_8125#2 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 490 ************************************************************ consensus_8125#0 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 720 consensus_8125#1 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 720 consensus_8125#2 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 550 ************************************************************ consensus_8125#0 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 780 consensus_8125#1 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 780 consensus_8125#2 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 610 ************************************************************ consensus_8125#0 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 840 consensus_8125#1 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 840 consensus_8125#2 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 670 ************************************************************ consensus_8125#0 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 900 consensus_8125#1 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 900 consensus_8125#2 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 730 ************************************************************ consensus_8125#0 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 960 consensus_8125#1 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 960 consensus_8125#2 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 790 ************************************************************ consensus_8125#0 TGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAA 1020 consensus_8125#1 TGAAAAAAAAAAAAAAAAAGGCCACAT--------------------------------- 987 consensus_8125#2 TGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA----------------- 833 ***** * * ** * * consensus_8125#0 TGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA 1080 consensus_8125#1 ------------------------------------------------------------ consensus_8125#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||