These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence [CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCCATGGCGAGAATCCCGCTGCTGCTGGCCCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGGCCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTCGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT-GAATTAGCGAATAAAATGGTGGGATTGGAATAATGGTGCCCATCTTAATTCAAAAAAA] [+] EMBL AK102768 [CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCCATGGCGAGAATCCCGCTGCTGCTGGCCCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGGCCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTCGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATG ] [+] EMBL BI801723 [ gccaGTC GGGGT ACC C GCCAT GCCCCCT GT GGC GGTTGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCTC GCGGGTGTGCAGTGGAACGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCGCGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGCGTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGA CAGTCGTGGACC ACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATGGTGGGATTGGAATAATGGTGCCCATCTTAATTCAAAAAAA] [+] EMBL AU174925 [ CGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAATGGATTTAGCGAATAAAATGGTGGGATTGG ] [-] EMBL AU174926 [ CGTCGCCGTCGTGTACGAGCAGTCGTGGACCAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTCCAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTGCCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGCTAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGCATGTAAGACAGCGAGTCCACACTTGTAAT GAATTAGCGAATAAAATGGTGGG ] consensusID : consensus_8148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNNCTGCTGCCTGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGGGNCACTATTTGGGGCCCCCCCCCTTTTTTTTTTTTGTNGGCCGCCCCCCGGGTGGTAGAGAGAACCCCCCTAAAAAAAAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCCCAAATTTTTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAAAAAAAGGGCCCCCCCCC] [+] EMBL CA758428 [CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCCAAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGATCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNNCTGCTGCCTGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGGGNCACTATTTGGGGCCCCCCCCCTTTTTTTTTTTTGTNGGCCGCCCCCCGGGTGGTAGAGAGAACCCCCCTAAAAAAAAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCCCAAATTTTTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAAAAAAAGGGCCCCCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8148#0 CTTCTCTGCTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCC 60 consensus_8148#1 --------CTTGCTCCTCCCACACGCCAAAGCAATTTTAGCCCGTACCCCCCTGCATCCC 52 **************************************************** consensus_8148#0 AAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGA 120 consensus_8148#1 AAGCGCCCGAAACCGCCTCTCCCCTACACCAATACCACCACCGCTTCCTTTCCGATCCGA 112 ************************************************************ consensus_8148#0 TCCCTTCCCCTCGATCGACGGCGGCCA----TGGCGAG----AATCCCGCTGCTGCTGGC 172 consensus_8148#1 TCCCTTCCCCTCGATCGACGGCGGCNNCATGNGNCGAAGNAAAATCCCGNN-CTGCTGCC 171 ************************* * *** ******* ****** * consensus_8148#0 CCTCCTGCTCGCCGTCTCCGCCGCCGCCGCCGCGCAGGTCGGGGGTAACCGCGGCCATGG 232 consensus_8148#1 TGGCCCCTCCCTTGCCTCGNCCGGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 231 ** * * *** *** consensus_8148#0 CCCGCTGGTGGGCGGGTGGAGCCCGATCACGGACGTGGGCGACCCCCACATCCAGGAGCT 292 consensus_8148#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 291 consensus_8148#0 CGGCGGGTGGGCGGTGGAGCGGCACGCCTCGCTCTCCAGCGACGGGCTGCGGTTCCGCCG 352 consensus_8148#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 351 consensus_8148#0 CGTGACGAGCGGCGAGCAGCAGGTGGTCTCCGGGATGAACTACCGCCTCGTCGTCTCCGC 412 consensus_8148#1 NNNNNNNNNNAAAAAAAAANNNGGGGGGGGGGGAAAAAAACCCCGCGGGGG-GNCACTAT 410 * * * ** ** * ** **** * * * * consensus_8148#0 GTCAGATCCCGCGGGGGCCACCGCGTCCTACGTCGCCGTCGTGTACGAGCAGTCGTGGAC 472 consensus_8148#1 TTGGGGCCCC-------CCCCCTTTTTTTTTTTTGTNGGC-CGCCCCCCGGGTGGTAGAG 462 * * *** ** ** * * * * * * * * ** ** ** consensus_8148#0 CAACACCCGCCAGCTCACCTCCTTCAAGCCCGCCGCCGCGCACTGATCCATCCCTCCCTC 532 consensus_8148#1 AGAACCCCCCTAAAAAA--------AAAAGGAAAAAGGGGGGGGGAAAAAACCCCCCCCC 514 * *** * * * ** * * ** * *** *** * consensus_8148#0 CAGATCTATCTTATCTATGTCTCTTCTGCTCCATCTCGATCAGCTGTTAAATTTTCCCTG 592 consensus_8148#1 CAAATTT--TTTAAGAAAAATTCTTGGTTNNNGGGGGGGGGGGCCGCCGGGGGTAAAAAA 572 ** ** * *** * **** * ** * * consensus_8148#0 CCTAATCTCTCTCTGTTAATCACACATCTCATGTAATTCTCATGTATGATGAGCACAAGC 652 consensus_8148#1 AAAAAGGGCCCCCCCCC------------------------------------------- 589 ** * * * consensus_8148#0 TAAGTACCTGTACTTGTTCGGTCTGAGTTGTGTCCCCGTGTGTGCGGTTCAATCTTTTGC 712 consensus_8148#1 ------------------------------------------------------------ consensus_8148#0 ATGTAAGACAGCGAGTCCACACTTGTAATGAATTAGCGAATAAAATGGTGGGATTGGAAT 772 consensus_8148#1 ------------------------------------------------------------ consensus_8148#0 AATGGTGCCCATCTTAATTCAAAAAAA 799 consensus_8148#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||