These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1347 fasta sequence [TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC-TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT] [+] EMBL AK068956 [TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATT GGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT] [+] EMBL AK058743 [ AAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAG ] [+] EMBL OSS4258A [ GAAAAACAAGAGCGCTGTGTNGGTG NCACCGCCGGACCACCACCGCGACCCCTCGATCCNNGCGATCCCACAGCATTGGTCGGTCCCCGTNGATCCGGCCGCCGNNGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGNAGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTNGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTNGATAAGATCAAGGATGCCAATCGACGGAGCAGGCANCTCGAAG GCTTCACTGATAAGATGCGGNCTT CAAGAAGCTTATCAAGG CTTTNAGCGAGTTGTCAAAGATATG ] [+] EMBL D42744 [ aTTCCCCAATAAAAAGCCATCACAAATGGTGAAAGAAA TGGTAGNCCGGTTGCAACTGAACGCGCCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGT ] consensusID : consensus_8166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA] [+] EMBL AU029618 [GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8166#0 TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGT-GTC 59 consensus_8166#1 ----------------------------------------------GNCGCNTNGTTGTC 14 ** ** *** consensus_8166#0 GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 119 consensus_8166#1 GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 74 ************************************************************ consensus_8166#0 CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 179 consensus_8166#1 CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 134 ************************************************************ consensus_8166#0 GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 239 consensus_8166#1 GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 194 ************************************************************ consensus_8166#0 TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAG 299 consensus_8166#1 TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAG 254 ****************************************** ***************** consensus_8166#0 TCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 359 consensus_8166#1 TCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 314 ****************** ***************************************** consensus_8166#0 CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTC 419 consensus_8166#1 CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGA-CAGGCA-CTC 372 ************************************************* ****** *** consensus_8166#0 GAAGAGCTCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTT 479 consensus_8166#1 GAAGA-CTCACTGATAA------------------------------------------- 388 ***** *********** consensus_8166#0 GTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAA 539 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 CAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAA 599 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 AATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAAT 659 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 GTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATG 719 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 GATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTA 779 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 GGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAAT 839 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 GAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGT 899 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 AGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTC 959 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 ATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCT 1019 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 GGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCA 1079 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 TACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTAC 1139 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 TACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTAC 1199 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 TGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTAT 1259 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 TCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCG 1319 consensus_8166#1 ------------------------------------------------------------ consensus_8166#0 TATGGATCATCCAATAATACAGCGTTTT 1347 consensus_8166#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||