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Oryza sativa
cluster # 8166 cluster # 8166       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8166#0 length = 1347 sequences # 4  
consensus_8166#1 length = 388 sequences # 1  

consensusID : consensus_8166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1347
fasta sequence
                              [TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC-TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT]

[+] EMBL AK068956             [TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATT        GGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT]
[+] EMBL AK058743             [                            AAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAG                              ]
[+] EMBL OSS4258A             [                                      GAAAAACAAGAGCGCTGTGTNGGTG NCACCGCCGGACCACCACCGCGACCCCTCGATCCNNGCGATCCCACAGCATTGGTCGGTCCCCGTNGATCCGGCCGCCGNNGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGNAGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTNGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTNGATAAGATCAAGGATGCCAATCGACGGAGCAGGCANCTCGAAG GCTTCACTGATAAGATGCGGNCTT CAAGAAGCTTATCAAGG CTTTNAGCGAGTTGTCAAAGATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL D42744               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aTTCCCCAATAAAAAGCCATCACAAATGGTGAAAGAAA TGGTAGNCCGGTTGCAACTGAACGCGCCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGT                                                                                                           ]


>consensus_8166#0 TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCG GAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTC GGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGG TGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGT TGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGT CGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGC AAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCG AAGAGCTCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTG TCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAAC AGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAA ATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATG TCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGG ATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAG GTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATG AGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTA GGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCA TAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTG GTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCAT ACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACT ACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACT GTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATT CTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGT ATGGATCATCCAATAATACAGCGTTTT



consensusID : consensus_8166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA]

[+] EMBL AU029618             [GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA]


>consensus_8166#1 GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGAT CCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTC TGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTT GTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGG AGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACA TCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGAC GGACAGGCACTCGAAGACTCACTGATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8166#0      TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGT-GTC 59
consensus_8166#1      ----------------------------------------------GNCGCNTNGTTGTC 14
                                                                       **   ** ***

consensus_8166#0      GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 119
consensus_8166#1      GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 74
                      ************************************************************

consensus_8166#0      CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 179
consensus_8166#1      CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 134
                      ************************************************************

consensus_8166#0      GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 239
consensus_8166#1      GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 194
                      ************************************************************

consensus_8166#0      TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAG 299
consensus_8166#1      TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAG 254
                      ****************************************** *****************

consensus_8166#0      TCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 359
consensus_8166#1      TCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 314
                      ****************** *****************************************

consensus_8166#0      CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTC 419
consensus_8166#1      CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGA-CAGGCA-CTC 372
                      ************************************************* ****** ***

consensus_8166#0      GAAGAGCTCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTT 479
consensus_8166#1      GAAGA-CTCACTGATAA------------------------------------------- 388
                      ***** ***********                                           

consensus_8166#0      GTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAA 539
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      CAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAA 599
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      AATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAAT 659
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      GTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATG 719
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      GATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTA 779
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      GGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAAT 839
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      GAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGT 899
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      AGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTC 959
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      ATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCT 1019
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      GGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCA 1079
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      TACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTAC 1139
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      TACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTAC 1199
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      TGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTAT 1259
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      TCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCG 1319
consensus_8166#1      ------------------------------------------------------------
                                                                                  

consensus_8166#0      TATGGATCATCCAATAATACAGCGTTTT 1347
consensus_8166#1      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)