These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 888 fasta sequence [GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC-TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAAT--AAAC--TAAAT-ATACAATAAATATCAGAACACAACAAAAAATGAATAAGAGATCATTACACAAAATATAAAAATTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA] [+] EMBL AK106328 [GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAAT AAAC TAAAT ATACAATAAATATCAGAACACAACAAAAAAT ] [+] EMBL C27912 [ GGGCAAAACTAGGGTTTCGGGTTGTTTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGG CCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTNTCGTCTTTGCATTTNCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTAATCTCTCTCGTTTTGCTTNGATTTTNCCGTTGGGCCG ] [+] EMBL AU069661 [ GATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCT ] [+] EMBL AU097574 [ CCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATTGGTAATACAAACAATTACTGAGACAATGAA A CA AAAACAA AAAAAATGAATAAGAGATCATTACACAAAATATAAAAATTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA] consensusID : consensus_8188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [AACATGGTTTACTGCTGCTTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCCTCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAGGCAAAATNAAATAACAAAAGAAAAAAAAAACCGNCATAAAAAAAAAAAAAAAAAAAAAAATCAAAAAAA] [+] EMBL AU182174 [AACATGGTTTACTGCTGCTTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCCTCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAGGCAAAATNAAATAACAAAAGAAAAAAAAAACCGNCATAAAAAAAAAAAAAAAAAAAAAAATCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8188#0 GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTC 60 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 TCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGG 120 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 CCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGG 180 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 GAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTCGAT 240 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 TTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCG 300 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 ATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGG 360 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 ATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCC 420 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 CGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGG 480 consensus_8188#1 ------------------------------------------------------------ consensus_8188#0 GGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGC 540 consensus_8188#1 ------------------------------------------AACATGGTTTACTGCTGC 18 ****************** consensus_8188#0 TTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCC 600 consensus_8188#1 TTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCC 78 ** ************************************** ****************** consensus_8188#0 TCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCG 660 consensus_8188#1 TCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCG 138 ******* * *********************************** ************** consensus_8188#0 TCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTA 720 consensus_8188#1 TCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTA 198 ******* ************ *************************************** consensus_8188#0 GCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAATA-AACTAAATAT 779 consensus_8188#1 GCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAG 258 ***************************** *********** ****** * ***** consensus_8188#0 ACAATAAATATCAGAACACAACAAAAAATGAATAAGAGATCATTACACAAAATATAAAAA 839 consensus_8188#1 GCAA--AATNAAATAACAAAAGAAAAAAAAAACCG----NCATAAAAAAAAAAAAAAAAA 312 *** *** * **** ** ****** ** *** * * **** * ***** consensus_8188#0 TTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA 888 consensus_8188#1 --AAAAAATCAAAAAAA-------------------------------- 327 ***** *** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||