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Oryza sativa
cluster # 8228 cluster # 8228       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8228#0 length = 2356 sequences # 2  
consensus_8228#1 length = 690 sequences # 1  
consensus_8228#2 length = 680 sequences # 1  
consensus_8228#3 length = 533 sequences # 1  

consensusID : consensus_8228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2356
fasta sequence
                              [TTCCATCTTCCTCCTCAGCTCCTCCTCCTCACAACCAGCTTCTTCCTCCTCCACCTCGCCCAATTCTCTCCTCCACGGCTCCACCTCTGCTCGATCGGATCAAGATCAGAATCACGATCAGATCGATCCGCCCGCCATGAGCACGCTATCCGCCGGGGTCCTCCTCAAGCTGCTCGAC-GGCATGAAGGCCGGCGCAGCCAAGCCCGTCGGGGAGCACCGCACCGCGCTGCTCCAGGTCACCGACATCGTCCCCGCCGACCTCGACGACAAGGACCTCCTCCCCCGCCATGGCAAGTTCTACGTCAAGGTCTCCGACTCCTCCCACTCCATCTACGCCACCCTCCCGCTCCCCCAGGCCGATCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTCCACCTCGACCGCCTCGACCCGGGCTCCCCCGTCCCCGTCATCGTCGGCGCCAGGCCCCTTCCCGGCCGCCACCCGCTCGTCGTCGGCACCCCCGACCCGGCCACCCGCGCCAAGCCCGCCGCGCCCAGGAGGGGCTCCTGGGGCCCTGAGAACCATGCCGGAATCCTCGCCTCCCCCAGGGTCATCAAGCCCACCACGCTCAACTTCGAAGACAGGACGCCCGTCAAGGAGAGACCGCCCGCGCCCTCGCCGGCGCGGAGCACCGCCTCCTCCCTCAGGAAGAGCAGCAGCGTCCTCCCCAGGATCACCAGGAGCAAGAGCTTCGTCGCCGACAGGGCTCCTGACCACCCCAAGATCCCCAAGAGCCCATTCCCCGCCGTCCGTAACCCACCACTATATACTCCCTCTTCAATTCGATTAGATTCGATTTGATTCTTCTCTGAATAATTGAGCAATTGGAGTTTCATCCACAAGTTGTGATAAGAGACGATTGATTATCTGTGCGGTGCAGGAGAAGATCTCAATGAGCTGCTACACAGCTTCGCGGGCGATGAGCAGAAGAGCGCCGCCCAAGGAGGAAGAACCCTCCTCACCGTCTTCGGATGATGAGCTCTGCAGCTCCGCGACGTCGTCCAAGAAGAGGCCGTCCACGAGCACTCGCGTTCCGGTGCCCGGGAAGCTCAATCTCCTGGGGAAGGCAAGTCCCTCAACTCAATTTCCATCCTGAATTCGCAGCGTCCTGATGCAGTCGTCTGATTGGGTTGCTGATTTCACTTCGTTCCTTGATTCAGGAAGCCATGGAGCAGAGGGAGCAAGCTCAGAAGGCCGCCCTCGAGGCGCTGCGCAACGCCTCCGCCACGGACAACGTAGTCAGGATCTACAAGATGTTCGCTGAATTGAGCAAGACGGCGAGGCCCGACGCACCGGCCACCTGCTTCGAGAGCTTCCTCAGCTTCCACCAGGAGGCCGTGCAGGCCGTGACCGACATCGAGTCGATCCAGGCGGCCACCTCGATGGCCGGCGCCGTGGCAGCCGATGAGCCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTCGTCGTTGTCCAAGAGGAGAGGAGCCCTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAGAACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGCGACGAGAAGCGATCTTCTTCTGGTAGTACTACCACCGGTGCTCTCGGGTCGTCGTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTGAGGGTGATCAACTGGGTAGAGATGGAGCAGAGTGGCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTATATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTGCTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTTGACTAATTCAACCTGCTTTCGCGGTGATAGAAATTGTTCTGATCACGTGGCATGAATGCTTTGCTATACA]

[+] EMBL AK102103             [TTCCATCTTCCTCCTCAGCTCCTCCTCCTCACAACCAGCTTCTTCCTCCTCCACCTCGCCCAATTCTCTCCTCCACGGCTCCACCTCTGCTCGATCGGATCAAGATCAGAATCACGATCAGATCGATCCGCCCGCCATGAGCACGCTATCCGCCGGGGTCCTCCTCAAGCTGCTCGAC GGCATGAAGGCCGGCGCAGCCAAGCCCGTCGGGGAGCACCGCACCGCGCTGCTCCAGGTCACCGACATCGTCCCCGCCGACCTCGACGACAAGGACCTCCTCCCCCGCCATGGCAAGTTCTACGTCAAGGTCTCCGACTCCTCCCACTCCATCTACGCCACCCTCCCGCTCCCCCAGGCCGATCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTCCACCTCGACCGCCTCGACCCGGGCTCCCCCGTCCCCGTCATCGTCGGCGCCAGGCCCCTTCCCGGCCGCCACCCGCTCGTCGTCGGCACCCCCGACCCGGCCACCCGCGCCAAGCCCGCCGCGCCCAGGAGGGGCTCCTGGGGCCCTGAGAACCATGCCGGAATCCTCGCCTCCCCCAGGGTCATCAAGCCCACCACGCTCAACTTCGAAGACAGGACGCCCGTCAAGGAGAGACCGCCCGCGCCCTCGCCGGCGCGGAGCACCGCCTCCTCCCTCAGGAAGAGCAGCAGCGTCCTCCCCAGGATCACCAGGAGCAAGAGCTTCGTCGCCGACAGGGCTCCTGACCACCCCAAGATCCCCAAGAGCCCATTCCCCGCCGTCCGTAACCCACCACTATATACTCCCTCTTCAATTCGATTAGATTCGATTTGATTCTTCTCTGAATAATTGAGCAATTGGAGTTTCATCCACAAGTTGTGATAAGAGACGATTGATTATCTGTGCGGTGCAGGAGAAGATCTCAATGAGCTGCTACACAGCTTCGCGGGCGATGAGCAGAAGAGCGCCGCCCAAGGAGGAAGAACCCTCCTCACCGTCTTCGGATGATGAGCTCTGCAGCTCCGCGACGTCGTCCAAGAAGAGGCCGTCCACGAGCACTCGCGTTCCGGTGCCCGGGAAGCTCAATCTCCTGGGGAAGGCAAGTCCCTCAACTCAATTTCCATCCTGAATTCGCAGCGTCCTGATGCAGTCGTCTGATTGGGTTGCTGATTTCACTTCGTTCCTTGATTCAGGAAGCCATGGAGCAGAGGGAGCAAGCTCAGAAGGCCGCCCTCGAGGCGCTGCGCAACGCCTCCGCCACGGACAACGTAGTCAGGATCTACAAGATGTTCGCTGAATTGAGCAAGACGGCGAGGCCCGACGCACCGGCCACCTGCTTCGAGAGCTTCCTCAGCTTCCACCAGGAGGCCGTGCAGGCCGTGACCGACATCGAGTCGATCCAGGCGGCCACCTCGATGGCCGGCGCCGTGGCAGCCGATGAGCCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTCGTCGTTGTCCAAGAGGAGAGGAGCCCTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAGAACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGCGACGAGAAGCGATCTTCTTCTGGTAGTACTACCACCGGTGCTCTCGGGTCGTCGTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTGAGGGTGATCAACTGGGTAGAGATGGAGCAGAGTGGCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTATATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTGCTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTTGACTAATTCAACCTGCTTTCGCGGTGATAGAAATTGTTCTGATCACGTGGCATGAATGCTTTGCTATACA]
[+] EMBL C97308               [                           CTCACAACCAGCTTCTTCCTCCTCCACCTCGCCCAATTCTCTCCTCCACGGCTCCACCTCTGCTCGATCGGATCAAGATCAGAATCACGATCAGATCGATCCGNCCGCCATGAGCACGCTATCCGCCGGGGTCCTCCTCAAGCTGCTCGACGGGCATGAAGGCCGGCGCA NAAAGCCCGTCGGGGAGCACCGCACCG GCTGCTCCAGGTCACCGACATCGTNCCCGCCGACCTCGACGACAAGGACCTTCTTCCCCGCCATGGCAAGTTCTACGTCAAGGTCTCCGACTTCTTCCANTTCATNTACGGCAACCTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_8228#0 TTCCATCTTCCTCCTCAGCTCCTCCTCCTCACAACCAGCTTCTTCCTCCTCCACCTCGCC CAATTCTCTCCTCCACGGCTCCACCTCTGCTCGATCGGATCAAGATCAGAATCACGATCA GATCGATCCGCCCGCCATGAGCACGCTATCCGCCGGGGTCCTCCTCAAGCTGCTCGACGG CATGAAGGCCGGCGCAGCCAAGCCCGTCGGGGAGCACCGCACCGCGCTGCTCCAGGTCAC CGACATCGTCCCCGCCGACCTCGACGACAAGGACCTCCTCCCCCGCCATGGCAAGTTCTA CGTCAAGGTCTCCGACTCCTCCCACTCCATCTACGCCACCCTCCCGCTCCCCCAGGCCGA TCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTCCACCTCGACCGCCTCGACCC GGGCTCCCCCGTCCCCGTCATCGTCGGCGCCAGGCCCCTTCCCGGCCGCCACCCGCTCGT CGTCGGCACCCCCGACCCGGCCACCCGCGCCAAGCCCGCCGCGCCCAGGAGGGGCTCCTG GGGCCCTGAGAACCATGCCGGAATCCTCGCCTCCCCCAGGGTCATCAAGCCCACCACGCT CAACTTCGAAGACAGGACGCCCGTCAAGGAGAGACCGCCCGCGCCCTCGCCGGCGCGGAG CACCGCCTCCTCCCTCAGGAAGAGCAGCAGCGTCCTCCCCAGGATCACCAGGAGCAAGAG CTTCGTCGCCGACAGGGCTCCTGACCACCCCAAGATCCCCAAGAGCCCATTCCCCGCCGT CCGTAACCCACCACTATATACTCCCTCTTCAATTCGATTAGATTCGATTTGATTCTTCTC TGAATAATTGAGCAATTGGAGTTTCATCCACAAGTTGTGATAAGAGACGATTGATTATCT GTGCGGTGCAGGAGAAGATCTCAATGAGCTGCTACACAGCTTCGCGGGCGATGAGCAGAA GAGCGCCGCCCAAGGAGGAAGAACCCTCCTCACCGTCTTCGGATGATGAGCTCTGCAGCT CCGCGACGTCGTCCAAGAAGAGGCCGTCCACGAGCACTCGCGTTCCGGTGCCCGGGAAGC TCAATCTCCTGGGGAAGGCAAGTCCCTCAACTCAATTTCCATCCTGAATTCGCAGCGTCC TGATGCAGTCGTCTGATTGGGTTGCTGATTTCACTTCGTTCCTTGATTCAGGAAGCCATG GAGCAGAGGGAGCAAGCTCAGAAGGCCGCCCTCGAGGCGCTGCGCAACGCCTCCGCCACG GACAACGTAGTCAGGATCTACAAGATGTTCGCTGAATTGAGCAAGACGGCGAGGCCCGAC GCACCGGCCACCTGCTTCGAGAGCTTCCTCAGCTTCCACCAGGAGGCCGTGCAGGCCGTG ACCGACATCGAGTCGATCCAGGCGGCCACCTCGATGGCCGGCGCCGTGGCAGCCGATGAG CCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTCGTCGTTGTCCAAGAGGAGAGGAGCC CTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAG AACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGC GACGAGAAGCGATCTTCTTCTGGTAGTACTACCACCGGTGCTCTCGGGTCGTCGTTGAGG CTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCG CTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAG AGTAGCTGCTGCTGCCCGCAGTCGCTGATACTGAGGGTGATCAACTGGGTAGAGATGGAG CAGAGTGGCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGG AAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGT AGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGA GATGCGGATTCTTTTGCTTCATGGTATATGAAGCTGTTCTGCCCTCCTCCCTGTGACATA AATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCT TGAGCAAGTGCTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTA ACTTGTTTTTTTTATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCAT TTGCTTGACTAATTCAACCTGCTTTCGCGGTGATAGAAATTGTTCTGATCACGTGGCATG AATGCTTTGCTATACA



consensusID : consensus_8228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [CTTCGACGACAAGGACNTCTTCCCCCGCCATGNCAAGTTCTACGTCAAGGTCTCCGAACTCCTCCCATTCCATCTACGCCACCTTCCCCGNTCCCCCCAGGCCGATCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGATTCGTGGAGNTGCGCTGGAGACTGNCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTNCTGCTGCCCGCAGTCGCTGATACTGAGGGTGATCAACTGGGTAGAGATGGAGCAGAGTGNCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTATATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTNTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAAAAA]

[+] EMBL AU083404             [CTTCGACGACAAGGACNTCTTCCCCCGCCATGNCAAGTTCTACGTCAAGGTCTCCGAACTCCTCCCATTCCATCTACGCCACCTTCCCCGNTCCCCCCAGGCCGATCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGATTCGTGGAGNTGCGCTGGAGACTGNCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTNCTGCTGCCCGCAGTCGCTGATACTGAGGGTGATCAACTGGGTAGAGATGGAGCAGAGTGNCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTATATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTNTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAAAAA]


>consensus_8228#1 CTTCGACGACAAGGACNTCTTCCCCCGCCATGNCAAGTTCTACGTCAAGGTCTCCGAACT CCTCCCATTCCATCTACGCCACCTTCCCCGNTCCCCCCAGGCCGATCTCGTCCTCAGCAA CAAGCTCCAGCTCGGCCAGTTCGTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGA GCTGGTTTATGGATTCGTGGAGNTGCGCTGGAGACTGNCCTGAAGAAGAAGAGCAAGGCG TCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTNCTGCTGCCCGCAGTCGCTGATACTG AGGGTGATCAACTGGGTAGAGATGGAGCAGAGTGNCGATGGCAGCAGCAGGAAGCCCAGT CACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTC CTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAG ATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTATATGAAG CTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAG CCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTNTACGCTCTAGTTTGAGTACAAGT AGTACCATCCGTTATTATTCATTTTAAAAA



consensusID : consensus_8228#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [TCCAGGCGGCCACCTCGATGGCGGGCGCCGTGGCAGCCGATGAGCCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTNGTCGTTGTCCAAGAGGAGAGGCGCCCTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAGAACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGCGACGAGAAGCGATCTTCTTCTGGTAGTACTTCCACCGGTGCTCTCGGGTCGTCGTTGAGGCTGGCGAAGCAGATACAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTGAGGGTGACCAACTGGGTAGAGATGGAGCAGAGTGGCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTAAAAAAAAAAA]

[-] EMBL CA759834             [TCCAGGCGGCCACCTCGATGGCGGGCGCCGTGGCAGCCGATGAGCCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTNGTCGTTGTCCAAGAGGAGAGGCGCCCTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAGAACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGCGACGAGAAGCGATCTTCTTCTGGTAGTACTTCCACCGGTGCTCTCGGGTCGTCGTTGAGGCTGGCGAAGCAGATACAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTGAGGGTGACCAACTGGGTAGAGATGGAGCAGAGTGGCGATGGCAGCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGGCCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTTATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTGCTTCATGGTAAAAAAAAAAA]


>consensus_8228#2 TCCAGGCGGCCACCTCGATGGCGGGCGCCGTGGCAGCCGATGAGCCGCCGGTCTTGCAGG AGATTGCGCAGAACAGGTNGTCGTTGTCCAAGAGGAGAGGCGCCCTGGGCGTGTCCAAGT CGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAGAACCGGAGCTCCAACG CCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGCGACGAGAAGCGATCTT CTTCTGGTAGTACTTCCACCGGTGCTCTCGGGTCGTCGTTGAGGCTGGCGAAGCAGATAC AATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGAGGCTGCGCTGGAGACTGGCCTGA AGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCGGAAGCAGAGTAGCTGCTGCTGCC CGCAGTCGCTGATACTGAGGGTGACCAACTGGGTAGAGATGGAGCAGAGTGGCGATGGCA GCAGCAGGAAGCCCAGTCACCCGAGAGCGGCTGCCATTGCCAGGAAGCTTAGGATAAAGG CCAAGAACCCTTAATTCCTGCTAGTTTATTCTTTTGCTTGTTGTAGGCATTGAGAAGGTT ATCTGTAGAATCTGTAGATCAAGGAAAGGAAGTTCCAGGATAGAGATGCGGATTCTTTTG CTTCATGGTAAAAAAAAAAA



consensusID : consensus_8228#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [ACTGCTAATGGCAGNAANNAAAGAACCTTCTNNTNCCNGAAGCACNTNAAACTACAGGGTTAACNAACCGGGGAAAAGATGGANCNAGAAGTGGCTANTGGCAGCAANAAGGGAANCCCCAAGTCACCCCGAAAAAGCGGCTTCCATTTCCNAGGAATCCTTAGGGATAAAGNCNAAGGAACCCCTTAATNCCCTGCTAGTTTAATCCTTTTGCCTTGTTTGTAGGTCATTGAGAAGGTTAANCTGTAGAAATCTGTAGATCAAGGAAAGGAAGTNCCCAGGATAAGAGATGCGGATNCTTTTGCTCCATGGTATATGAAGCTGNTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTCTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTT]

[-] EMBL D42954               [ACTGCTAATGGCAGNAANNAAAGAACCTTCTNNTNCCNGAAGCACNTNAAACTACAGGGTTAACNAACCGGGGAAAAGATGGANCNAGAAGTGGCTANTGGCAGCAANAAGGGAANCCCCAAGTCACCCCGAAAAAGCGGCTTCCATTTCCNAGGAATCCTTAGGGATAAAGNCNAAGGAACCCCTTAATNCCCTGCTAGTTTAATCCTTTTGCCTTGTTTGTAGGTCATTGAGAAGGTTAANCTGTAGAAATCTGTAGATCAAGGAAAGGAAGTNCCCAGGATAAGAGATGCGGATNCTTTTGCTCCATGGTATATGAAGCTGNTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTCTACGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTT]


>consensus_8228#3 ACTGCTAATGGCAGNAANNAAAGAACCTTCTNNTNCCNGAAGCACNTNAAACTACAGGGT TAACNAACCGGGGAAAAGATGGANCNAGAAGTGGCTANTGGCAGCAANAAGGGAANCCCC AAGTCACCCCGAAAAAGCGGCTTCCATTTCCNAGGAATCCTTAGGGATAAAGNCNAAGGA ACCCCTTAATNCCCTGCTAGTTTAATCCTTTTGCCTTGTTTGTAGGTCATTGAGAAGGTT AANCTGTAGAAATCTGTAGATCAAGGAAAGGAAGTNCCCAGGATAAGAGATGCGGATNCT TTTGCTCCATGGTATATGAAGCTGNTCTGCCCTCCTCCCTGTGACATAAATTGACATCCA TACTATACAGTAGTCAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTCTA CGCTCTAGTTTGAGTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTT ATCATTGTCTTATCTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      TTCCATCTTCCTCCTCAGCTCCTCCTCCTCACAACCAGCTTCTTCCTCCTCCACCTCGCC 60
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CAATTCTCTCCTCCACGGCTCCACCTCTGCTCGATCGGATCAAGATCAGAATCACGATCA 120
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GATCGATCCGCCCGCCATGAGCACGCTATCCGCCGGGGTCCTCCTCAAGCTGCTCGACGG 180
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CATGAAGGCCGGCGCAGCCAAGCCCGTCGGGGAGCACCGCACCGCGCTGCTCCAGGTCAC 240
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CGACATCGTCCCCGCCGACCTCGACGACAAGGACCTCCTCCCCCGCCATGGCAAGTTCTA 300
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CGTCAAGGTCTCCGACTCCTCCCACTCCATCTACGCCACCCTCCCGCTCCCCCAGGCCGA 360
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      TCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTCGTCCACCTCGACCGCCTCGACCC 420
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GGGCTCCCCCGTCCCCGTCATCGTCGGCGCCAGGCCCCTTCCCGGCCGCCACCCGCTCGT 480
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CGTCGGCACCCCCGACCCGGCCACCCGCGCCAAGCCCGCCGCGCCCAGGAGGGGCTCCTG 540
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GGGCCCTGAGAACCATGCCGGAATCCTCGCCTCCCCCAGGGTCATCAAGCCCACCACGCT 600
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CAACTTCGAAGACAGGACGCCCGTCAAGGAGAGACCGCCCGCGCCCTCGCCGGCGCGGAG 660
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CACCGCCTCCTCCCTCAGGAAGAGCAGCAGCGTCCTCCCCAGGATCACCAGGAGCAAGAG 720
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CTTCGTCGCCGACAGGGCTCCTGACCACCCCAAGATCCCCAAGAGCCCATTCCCCGCCGT 780
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CCGTAACCCACCACTATATACTCCCTCTTCAATTCGATTAGATTCGATTTGATTCTTCTC 840
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      TGAATAATTGAGCAATTGGAGTTTCATCCACAAGTTGTGATAAGAGACGATTGATTATCT 900
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GTGCGGTGCAGGAGAAGATCTCAATGAGCTGCTACACAGCTTCGCGGGCGATGAGCAGAA 960
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GAGCGCCGCCCAAGGAGGAAGAACCCTCCTCACCGTCTTCGGATGATGAGCTCTGCAGCT 1020
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CCGCGACGTCGTCCAAGAAGAGGCCGTCCACGAGCACTCGCGTTCCGGTGCCCGGGAAGC 1080
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      TCAATCTCCTGGGGAAGGCAAGTCCCTCAACTCAATTTCCATCCTGAATTCGCAGCGTCC 1140
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      TGATGCAGTCGTCTGATTGGGTTGCTGATTTCACTTCGTTCCTTGATTCAGGAAGCCATG 1200
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GAGCAGAGGGAGCAAGCTCAGAAGGCCGCCCTCGAGGCGCTGCGCAACGCCTCCGCCACG 1260
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GACAACGTAGTCAGGATCTACAAGATGTTCGCTGAATTGAGCAAGACGGCGAGGCCCGAC 1320
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GCACCGGCCACCTGCTTCGAGAGCTTCCTCAGCTTCCACCAGGAGGCCGTGCAGGCCGTG 1380
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      ACCGACATCGAGTCGATCCAGGCGGCCACCTCGATGGCCGGCGCCGTGGCAGCCGATGAG 1440
consensus_8228#2      ----------------TCCAGGCGGCCACCTCGATGGCGGGCGCCGTGGCAGCCGATGAG 44
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTCGTCGTTGTCCAAGAGGAGAGGAGCC 1500
consensus_8228#2      CCGCCGGTCTTGCAGGAGATTGCGCAGAACAGGTNGTCGTTGTCCAAGAGGAGAGGCGCC 104
                                                                                  

consensus_8228#1      --------------------------------------CTTCGACGACAAGGACNTCTTC 22
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      CTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAG 1560
consensus_8228#2      CTGGGCGTGTCCAAGTCGGTGTCGTTCGCGCCGGGCACGCTGGATGACGGCGGCGGCAAG 164
                                                                                  

consensus_8228#1      CCCCGCCATGNCAAGTTCTACGTCAAGGTCTCCGAACTCCTCCCATTCCATCTACGCCAC 82
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      AACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGC 1620
consensus_8228#2      AACCGGAGCTCCAACGCCAGCAGAAAGTGCCTTGTACTAGACAAGATCGGAGAAGACGGC 224
                                                                                  

consensus_8228#1      CTTCCCCGNTCCCCCCAGGCCGATCTCGTCCTCAGCAACAAGCTCCAGCTCGGCCAGTTC 142
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GACGAGAAGCGATCTTCTTCTGGTAGTACTACCACCGGTGCTCTCGGGTCG-------TC 1673
consensus_8228#2      GACGAGAAGCGATCTTCTTCTGGTAGTACTTCCACCGGTGCTCTCGGGTCG-------TC 277
                                                                                  

consensus_8228#1      GTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGA-TTCGTGGA 201
consensus_8228#3      ------------------------------------------------------------
consensus_8228#0      GTTGAGGCTGGCGAAGCAGATGCAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGA 1733
consensus_8228#2      GTTGAGGCTGGCGAAGCAGATACAATGTGAGGCGTCGAGCTGGTTTATGGACTTCGTGGA 337
                                                                                  

consensus_8228#1      GN-TGCGCTGGAGACTGNCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCG 260
consensus_8228#3      ----------------------------------------------ACTGCTAATGGCAG 14
consensus_8228#0      GGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCG 1793
consensus_8228#2      GGCTGCGCTGGAGACTGGCCTGAAGAAGAAGAGCAAGGCGTCGGCGACGGCGGATGGGCG 397
                                                                    ** **  ****  *

consensus_8228#1      GAAGCAGAGTAGCTNCTGCTGCCCGCAGTCGCTGATACTG-AGGGTGATCAA--CTGGGT 317
consensus_8228#3      NAANNAAAGAACCTTCTNNTNCCNGAAGCACNTNAAACTACAGGGTTAACNAACCGGGGA 74
consensus_8228#0      GAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTG-AGGGTGATCAA--CTGGGT 1850
consensus_8228#2      GAAGCAGAGTAGCTGCTGCTGCCCGCAGTCGCTGATACTG-AGGGTGACCAA--CTGGGT 454
                       **  * ** * ** **  * ** * **    * * ***  ***** * * *  * *** 

consensus_8228#1      AGAGATGGAGCA--GAGTGNC-GATGGCAGCAGCA--GGAAGCCC--AGTCACCC---GA 367
consensus_8228#3      AAAGATGGANCNAGAAGTGGCTANTGGCAGCAANAAGGGAANCCCCAAGTCACCCCGAAA 134
consensus_8228#0      AGAGATGGAGCA--GAGTGGC-GATGGCAGCAGCA--GGAAGCCC--AGTCACCC---GA 1900
consensus_8228#2      AGAGATGGAGCA--GAGTGGC-GATGGCAGCAGCA--GGAAGCCC--AGTCACCC---GA 504
                      * ******* *    **** *   ********  *  **** ***  ********    *

consensus_8228#1      GAGCGGCTGCCATTGCCAGGAAG--CTTAGG-ATAAAGGCCAAGAA--CCCTTAATTCC- 421
consensus_8228#3      AAGCGGCTTCCATTTCCNAGGAATCCTTAGGGATAAAGNCNAAGGAACCCCTTAATNCCC 194
consensus_8228#0      GAGCGGCTGCCATTGCCAGGAAG--CTTAGG-ATAAAGGCCAAGAA--CCCTTAATTCC- 1954
consensus_8228#2      GAGCGGCTGCCATTGCCAGGAAG--CTTAGG-ATAAAGGCCAAGAA--CCCTTAATTCC- 558
                       ******* ***** **  * *   ****** ****** * *** *  ******** ** 

consensus_8228#1      TGCTAGTTTA-TTCTTTTGCTTG--TTGTAGG-CATTGAGAAGGTTA-TCTGTAGAA-TC 475
consensus_8228#3      TGCTAGTTTAATCCTTTTGCCTTGTTTGTAGGTCATTGAGAAGGTTAANCTGTAGAAATC 254
consensus_8228#0      TGCTAGTTTA-TTCTTTTGCTTG--TTGTAGG-CATTGAGAAGGTTA-TCTGTAGAA-TC 2008
consensus_8228#2      TGCTAGTTTA-TTCTTTTGCTTG--TTGTAGG-CATTGAGAAGGTTA-TCTGTAGAA-TC 612
                      ********** * ******* *   ******* **************  ******** **

consensus_8228#1      TGTAGATCAAGGAAAGGAAGTTCC-AGGATA-GAGATGCGGATTCTTTTGCTTCATGGTA 533
consensus_8228#3      TGTAGATCAAGGAAAGGAAGTNCCCAGGATAAGAGATGCGGATNCTTTTGCTCCATGGTA 314
consensus_8228#0      TGTAGATCAAGGAAAGGAAGTTCC-AGGATA-GAGATGCGGATTCTTTTGCTTCATGGTA 2066
consensus_8228#2      TGTAGATCAAGGAAAGGAAGTTCC-AGGATA-GAGATGCGGATTCTTTTGCTTCATGGTA 670
                      ********************* ** ****** *********** ******** *******

consensus_8228#1      TATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGT 593
consensus_8228#3      TATGAAGCTGNTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGT 374
consensus_8228#0      TATGAAGCTGTTCTGCCCTCCTCCCTGTGACATAAATTGACATCCATACTATACAGTAGT 2126
consensus_8228#2      AAAAAAAAAA-------------------------------------------------- 680
                       *  **                                                      

consensus_8228#1      CAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTNTACGCTCTAGTTTGAG 653
consensus_8228#3      CAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTCTACGCTCTAGTTTGAG 434
consensus_8228#0      CAATCAGCCACAGAAGGAAGAAAACACCTCTGCTTGAGCAAGTGCTACGCTCTAGTTTGA 2186
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      TACAAGTAGTACCATCCGTTATTATTCATTTTAAAAA----------------------- 690
consensus_8228#3      TACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTATC 494
consensus_8228#0      GTACAAGTAGTACCATCCGTTATTATTCATTTTAACTTGTTTTTTTTATCATTGTCTTAT 2246
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      ------------------------------------------------------------
consensus_8228#3      TTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTT--------------------- 533
consensus_8228#0      CTTGTGTTTTGCATGATGGGGGTAAGACAACCATTTGCTTGACTAATTCAACCTGCTTTC 2306
consensus_8228#2      ------------------------------------------------------------
                                                                                  

consensus_8228#1      --------------------------------------------------
consensus_8228#3      --------------------------------------------------
consensus_8228#0      GCGGTGATAGAAATTGTTCTGATCACGTGGCATGAATGCTTTGCTATACA 2356
consensus_8228#2      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)