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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 821 fasta sequence
[AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACA-GCTACCTCTTTTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGTATGAAGCCACC-CTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAAAAAAAAAAAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAACTTTA]
[+] EMBL CF330986 [AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACA GCTACCTCTTTTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGTATGAAGCCACC CTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAAAAAAAAAA ]
[-] EMBL CF330985 [ ATCAAGCCACCACAGGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCTCCTCTTTCAGTGCTTGTGTATGAAGCCACCTCTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTTTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGCCAAAAAAAAAAAA ]
[+] EMBL CF306099 [ TCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAACTTTA]
consensusID : consensus_8239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGGAG]
[+] EMBL CF319415 [GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTCGCCGTTCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGGAG]
consensusID : consensus_8239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[GAAGCAGANAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCAAAACGTCTTATAACATGAAACGGAGGGAGTAACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTA]
[+] EMBL C28134 [GAAGCAGANAAGAGGATGATGGGAGGAAGAAGGACAAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCAAAACGTCTTATAACATGAAACGGAGGGAGTAACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAATTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8239#0 AGCTCTCTGAGCTCTCCTCTTCTCCCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTC 60
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 ------------------------------------------------------------
consensus_8239#0 ACCGGAGCATTGCCGACCAAATACTCGCGCCAATAGCTTCGCCTCAATGAAGTGAATCCA 120
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 ------------------------------------------------------------
consensus_8239#0 TTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTT 180
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 ------------------------------------------------------------
consensus_8239#0 TTGCTGCCGGAGTTTATCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGT 240
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 ------------------------------------------------------------
consensus_8239#0 ATGAAGCCACCCTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGACGCTACC 300
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 ------------------------------------------------------------
consensus_8239#0 TTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGA 360
consensus_8239#2 ----------------------------------------------------------GA 2
consensus_8239#1 --------------------------GCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCA 34
*
consensus_8239#0 AGCAGAGAAGAGGATGATG------GGAGGAAGAAGGACAAAAAAAAAAAAGAG--AAAA 412
consensus_8239#2 AGCAGANAAGAGGATGATG------GGAGGAAGAAGGACAAGAAAAAGAGAGAG--AAAA 54
consensus_8239#1 TGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAATA 94
** * ** **** *** * * * * *** * * ** *
consensus_8239#0 GAAAAGCCTGAC--AAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTT 470
consensus_8239#2 GAAAAGCCTGAC--AAGTGGGCCCA----------------------------------- 77
consensus_8239#1 GCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCC-------CTACCC 147
* **** * ***** ***
consensus_8239#0 ATAAGACGNTTTGTCCAAAGTCAAAACGTCTTATAACATGAAACGGAGGGAGTTACCTTT 530
consensus_8239#2 -----------------------AAACGTCTTATAACATGAAACGGAGGGAGTAACCTTT 114
consensus_8239#1 ATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGTTGAGCTCTTGCCCTC 207
** **** * * * * ** *
consensus_8239#0 AGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCAT- 589
consensus_8239#2 AGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCAT- 173
consensus_8239#1 GCCGT--TCCGGCCATCTCCCTTTCTCTCTCCACCAGCCACCGACCTCCCCGGGTGCGTC 265
* ** * * ** ** * ** ** * ** ** * *
consensus_8239#0 ATATCCGATTCCA---ATGAAATTTGACCTAA---------ATTCATCTAAATTCAAACT 637
consensus_8239#2 ATATCCGATTCCA---ATGAAATTTGACCTAA---------ATTCATCTAAATTCAAACT 221
consensus_8239#1 GTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAGCGCCGCCG 325
* ** ** ** * *** * * * ** * * * *
consensus_8239#0 CTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATT 697
consensus_8239#2 CTACATTTTGATATCAGACTTGCTATTTTAAGATTTA----------------------- 258
consensus_8239#1 CCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGG 385
* * ** * ** ** * * * * *
consensus_8239#0 TGAATTTATATTTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTA 757
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 AACGGGAGGAAGAAGGAGAAGAAAAAGAAAAAGACTGACAGTAGAGTCTATTGTCTTTTG 445
consensus_8239#0 TCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCCGGTTGGAAC 817
consensus_8239#2 ------------------------------------------------------------
consensus_8239#1 GATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTT 505
consensus_8239#0 TTTA----- 821
consensus_8239#2 ---------
consensus_8239#1 GCGTTGGAG 514
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||