These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1550 fasta sequence [ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGCCGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGCGCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCCCGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGTCCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGCGGCGGGTGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCCCATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATGGTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCCGTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTGCTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNATTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT] [+] EMBL CB627390 [ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGCCGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGCGCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCCCGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGTCCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGCGGCGGGTGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGG ] [+] EMBL CB639532 [ TTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCC ] [+] EMBL CB641134 [ TCCATCCTTAGAGACTCTTGAACAGCAAGTTCACAGACCGTTTTTGAAAGAAATATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCTAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTTTTTGTTTTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGAC ] [+] EMBL CF196511 [ GAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCCCATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATGGTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCCGTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTGCTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNATTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT] consensusID : consensus_8263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGAAATAAGTTAAATCAGCTTGCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGTAAGCCTGTATGCGCGTTGTTTTTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA] [+] EMBL CB632784 [GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGAAATAAGTTAAATCAGCTTGCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGTAAGCCTGTATGCGCGTTGTTTTTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8263#0 ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGC 60 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGC 120 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 GCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCC 180 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGT- 239 consensus_8263#1 -------GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAAC--GGCGGTGGCGGAGGAAG 51 *** ***** **** * * ***** * * ***** * ** * * consensus_8263#0 CCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGC 299 consensus_8263#1 CCTCCGGGCAGGAG-GCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGA 110 ** *** ** * * * * ** * * **** ** ** * * ** ** consensus_8263#0 GGCGGGTGGAAGCGCCC-GCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGG 358 consensus_8263#1 TGTGCA-GCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGA-AATAAGTTAAATCAGCTT 168 * * * *** * * *** ** * ** * ** * ** * * consensus_8263#0 GCAGGAGGCTGACGT-CATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAG 417 consensus_8263#1 GCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGT 228 ** * * ** * * ** *** * * * * ** *** consensus_8263#0 CAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTG 477 consensus_8263#1 AAGCCTGTATGCGCGTTGTTT---TTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTG 285 * * **** ** * * ********************************* consensus_8263#0 CCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGC 537 consensus_8263#1 CCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGC 345 ************************************************************ consensus_8263#0 TGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTC 597 consensus_8263#1 TGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTC 405 ************************************************************ consensus_8263#0 GAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTC 657 consensus_8263#1 GAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTC 465 ************************************************************ consensus_8263#0 AACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCC 717 consensus_8263#1 AACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCC 525 ************************************************************ consensus_8263#0 TGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATT 777 consensus_8263#1 TGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATT 585 ************************************************************ consensus_8263#0 CCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAA 837 consensus_8263#1 CCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAA 645 ************************************************************ consensus_8263#0 TTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTT 897 consensus_8263#1 TTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTT 705 ************************************************************ consensus_8263#0 TGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGT 957 consensus_8263#1 TGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA--------- 756 *************************************************** consensus_8263#0 GGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACC 1017 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTC 1077 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCC 1137 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAG 1197 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAAC 1257 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATG 1317 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 GTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCC 1377 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 GTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTG 1437 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNA 1497 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT 1550 consensus_8263#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||