Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8270 cluster # 8270       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8270#0 length = 2094 sequences # 5  

consensusID : consensus_8270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2094
fasta sequence
                              [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATTCTAGAAGATTGTGATGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACTTCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGGAGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACAGGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTGCCAGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGCATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACACGCC-GTTTTGCGAAGGAGCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGATATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTGGCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAACTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCAGGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTACACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATTCTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCATGCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGA-CGGAGACCATTTGGACTTCCGATGGCTGTTGATGAATCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGATGACTTTCACAATCATGTTGCTGGTTGTAAGAATGAATCATCACATACTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTCACTCCAAAAATACAAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATGGCAGCAAGCATGAATGAGCTGAACATGTCAACCTTCCAGACGTGTGTGTGCTCATGCTGTTTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATATCACCTGTATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAATTTGCTAGAAAGTTGTTCAAGGTCAGTATGTAAGGACCACATTTTTTTTTCTGGTTGTGGATAGTTGAATATCATAGAATTATTTCTGAGGTAACGCATAAAATGTCTCCTGCATCTTATTAGAACGTATTGGATTAGAAAGGGGATTGTGTGCAGTGGAAGGAATTTGGAGTTGCGTAGTGGCAAATATACAATTGTTCGTAATATAGATCGCCCCACTGGAGCTGGAACATCTTAGGCTCCTAGCTGCATGGCTTGTATGATAAATTGGCGGATGCTTTGCAGTTTGCAGCTGAAAATTTATTTCTTC]

[+] EMBL AK106559             [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATTCTAGAAGATTGTGATGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACTTCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGGAGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACAGGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTGCCAGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGCATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACACGCC GTTTTGCGAAGGAGCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGATATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTGGCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAACTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCAGGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTACACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATTCTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCATGCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGA CGGAGACCATTTGGACTTCCGATGGCTGTTGATGAATCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGATGACTTTCACAATCATGTTGCTGGTTGTAAGAATGAATCATCACATACTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTCACTCCAAAAATACAAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATGGCAGCAAGCATGAATGAGCTGAACATGTCAACCTTCCAGACGTGTGTGTGCTCATGCTGTTTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATATCACCTGTATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAATTTGCTAGAAAGTTGTTCAAGGTCAGTATGTAAGGACCACATTTTTTTTTCTGGTTGTGGATAGTTGAATATCATAGAATTA                                                                                                                                                                                                                                    ]
[+] EMBL C28458               [                                                       TGTNATGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACTTCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGGAGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACAGGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTNCCAGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGCATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACANGCC GTTTT CGAAGGAGCTGGGTAACCTNAGGG ACTTAGGGTG TCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB669980             [                                                                                                                                                                                                                                                                                                                                                                                                                    GCCNGTTTTGCGAAGGAGCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGATATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTGGCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAACTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCAGGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTACACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATTCTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCATGCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGA CGGAGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU092964             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGCGAAAGAACGACCGGAGNCCATTTGGACTCCCGATGGCTGTTGATGAATCCACGCGTCNAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGATGACTTTCACAATCATGTTGCTGGTTGTAAGAATGAATCATCACATACTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTCACTCCAAAAATACAAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATGGCAGCAAGCATGAATGAGCTGAACATGTCAACCTTCCAGACGTGTGTGTGCTCATGCTGTTTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATATCACCTGTATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAAaaaaaa                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB669981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGATGACTTTCACAATCATGTTGCTGGTTGTAAGAATGAATCATCACATACTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTCACTCCAAAAATACAAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATGGCAGCAAGCATGAATGAGCTGAACATGTCAACCTTCCAGACGTGTGTGTGCTCATGCTGTTTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATATCACCTGTATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAATTTGCTAGAAAGTTGTTCAAGGTCAGTATGTAAGGACCACATTTTTTTTTCTGGTTGTGGATAGTTGAATATCATAGAATTATTTCTGAGGTAACGCATAAAATGTCTCCTGCATCTTATTAGAACGTATTGGATTAGAAAGGGGATTGTGTGCAGTGGAAGGAATTTGGAGTTGCGTAGTGGCAAATATACAATTGTTCGTAATATAGATCGCCCCACTGGAGCTGGAACATCTTAGGCTCCTAGCTGCATGGCTTGTATGATAAATTGGCGGATGCTTTGCAGTTTGCAGCTGAAAATTTATTTCTTC]


>consensus_8270#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATTCTAGAAGATTGTGA TGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACT TCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGG AGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACA GGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTGCC AGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGC ATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACACGCCGTTTTGCGAAGGA GCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAG CACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGA TATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTG GCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAA CTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCA GGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTA CACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATT CTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCAT GCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCT GCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGT TGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGA GCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAA ATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATG TGATGTCAATCTGCGAAAGAACGACGGAGACCATTTGGACTTCCGATGGCTGTTGATGAA TCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGT TGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCT TGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGG TTATCTATCTTGATGACTTTCACAATCATGTTGCTGGTTGTAAGAATGAATCATCACATA CTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTC ACTCCAAAAATACAAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATG GCAGCAAGCATGAATGAGCTGAACATGTCAACCTTCCAGACGTGTGTGTGCTCATGCTGT TTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATATCACCTGT ATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAATTTGCTAGAAAGTTGT TCAAGGTCAGTATGTAAGGACCACATTTTTTTTTCTGGTTGTGGATAGTTGAATATCATA GAATTATTTCTGAGGTAACGCATAAAATGTCTCCTGCATCTTATTAGAACGTATTGGATT AGAAAGGGGATTGTGTGCAGTGGAAGGAATTTGGAGTTGCGTAGTGGCAAATATACAATT GTTCGTAATATAGATCGCCCCACTGGAGCTGGAACATCTTAGGCTCCTAGCTGCATGGCT TGTATGATAAATTGGCGGATGCTTTGCAGTTTGCAGCTGAAAATTTATTTCTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)