These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1238 fasta sequence [AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGTTCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCA-GCAGAGCTGGAAGCGTTCTTCGCCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGATTTGAATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA-CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCAAAAAATAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTATGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATACTTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTCATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA] [+] EMBL AK073804 [AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGTTCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCA GCAGAGCTGGAAGCGTTCTTCGCTGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGGTTTGAATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGT ] [+] EMBL CA753253 [ TTTAA CCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGACGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCCAGTTCTCATTGCAAAGTGCAAACACCCGTGCGCCACAACATTATCCCACCATCA GCATAGCTGGAACCGTTCTTCGCCGCCGAAGAGCAACGGCACCGACCGGC TTCTTCGACAATTATAAC TTGATCCTGTGAATACCTGCCC CNTCCCGGCCAATTT AATGGGT AACCTAac ] [+] EMBL BI812917 [ TCTACCACAAGGCGCA CCACTCGAGTTCTCATTGCAAGGT CAAACACCCGTGC CCACAACATTATTCCAGCATCACGCAGAGCTGGAAGCGTTCTTC CCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCC GCCGATTTGAAT GGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCACCCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGT GCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAA TACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCAAAAAA ] [+] EMBL CA758266 [ ATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCACAGTTTAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTATGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATACTTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTCATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA] consensusID : consensus_8294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 916 fasta sequence [CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGTGGGGATTCTCTCTCTCTTCTTATTGTGCGATTCTTTTTTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAATCGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTCTATCCGGTTTTTCGCATCGGAAAATTTTGGGGATTTTTTTTCGGTGCGATTGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCGAGGAATCTTTTTTTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCTTGGTGGGATTCTTGTCCCTTTGCTAATTGAGACATGCAATTCGTGCTTTCCTTGTTGCCTAAATTTGTTCTTTTTCCATGTTTCTTGTGGCGATACAGCCTTTTCTTTTTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT] [+] EMBL AK064173 [CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGTGGGGATTCTCTCTCTCTTCTTATTGTGCGATTCTTTTTTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAATCGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTCTATCCGGTTTTTCGCATCGGAAAATTTTGGGGATTTTTTTTCGGTGCGATTGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCGAGGAATCTTTTTTTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCTTGGTGGGATTCTTGTCCCTTTGCTAATTGAGACATGCAATTCGTGCTTTCCTTGTTGCCTAAATTTGTTCTTTTTCCATGTTTCTTGTGGCGATACAGCCTTTTCTTTTTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8294#0 ---------------AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGC 45 consensus_8294#1 CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGC 60 ********************************************* consensus_8294#0 CGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCC 105 consensus_8294#1 CGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCC 120 ******************************************************** *** consensus_8294#0 CGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAG 165 consensus_8294#1 CGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAG 180 ************************************************************ consensus_8294#0 GTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCC 225 consensus_8294#1 GTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCC 240 *********************** ************************************ consensus_8294#0 CGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGG 285 consensus_8294#1 CGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGG 300 ************************************************************ consensus_8294#0 CTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCT 345 consensus_8294#1 CTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCT 360 ************************************************************ consensus_8294#0 GCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAG 405 consensus_8294#1 GCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAG 420 ************************************************************ consensus_8294#0 AACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTG 465 consensus_8294#1 AACGTCCTCGAGCTGGAGGCCATGGAAAGGT-------GGGGATTCTCTCTCTCTTCTTA 473 ****************************** ** ** ** * *** consensus_8294#0 ATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGT 525 consensus_8294#1 TTGTGCGATTCTTTT---TTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAAT 530 * * ** * * ** * *** * * ** ** * consensus_8294#0 TCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCAGCAGAGCTG 585 consensus_8294#1 -CGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTC 589 * * * *** * ** ** * *** * * * consensus_8294#0 GAAGCGTTCTTCGCCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAAC 645 consensus_8294#1 TATCCGGTTTTTCGCATCGGAAAATTTTGGGGAT------TTTTTTTCG----GTGCGAT 639 * ** * ** * ** * * ** * *** *** ** * consensus_8294#0 TTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGATTTGAATGGGTCAAGCTAGAC-TG 704 consensus_8294#1 TGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCG 699 * ** ** **** *** * * * ** *** * ** * * ** * consensus_8294#0 ATAGATTTTCAGGAAAAGAAGGGCACCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCG 764 consensus_8294#1 AGGAATCTTTTT--------TTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCT 751 * ** ** **** * * * * ** * * * * consensus_8294#0 TGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCC 824 consensus_8294#1 TGGTGG-GATTCTTGTCCCTTTGCTAATTGAGA-CATGC------AATTCGTGCTTTCCT 803 *** * * *** * * ** * ** * ** **** * ** * consensus_8294#0 TGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCC 884 consensus_8294#1 TGTTGCCTAAATTTGTTCTTTTTCCATGT----TTCTTGTGGCGATACAGCCTTTTCTTT 859 *** * ** *** * * *** * ** * * **** ** * consensus_8294#0 TCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGC 944 consensus_8294#1 TTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT--- 916 * * * * ****** * * ** ** * *** * * *** consensus_8294#0 CTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATA 1004 consensus_8294#1 ------------------------------------------------------------ consensus_8294#0 TTGTGTCAAAAAATAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTA 1064 consensus_8294#1 ------------------------------------------------------------ consensus_8294#0 TGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATAC 1124 consensus_8294#1 ------------------------------------------------------------ consensus_8294#0 TTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTC 1184 consensus_8294#1 ------------------------------------------------------------ consensus_8294#0 ATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA 1238 consensus_8294#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||