These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_83#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1085 fasta sequence [GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT] [+] EMBL BE039737 [GATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGCGTCCATACCCGCACCCCCTCTCGCCCTTCTTCTGTTCTTCTGCGTCGGCGAGTGCTCCCGCCCCCCGCAGGTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTCGCGGCCATCCGTCTCCCTAACTAGGTCCTTCACGGGACCGCCATCCTCGCCGGCCCCGTCTCCTCCAGGCTCGTTCGCCCCCACGCGACTACGCGCCGATCCTCCTATGGTAGCGAGTGTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTCCTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGGAGTCCCGCGGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGCGCGAACTTTGCGGGGCGCGTCGCGCGTGGGTCCCCGCTACACTCCTCGTGCCACTCGGCGGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATGCTAGTCGTTAGTTCCGTGCGAGGGTGTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCCAGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGCCTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGACTTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACGCTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGCGCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGTGTTATCGTGGCTTT] consensusID : consensus_83#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence [CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC] [+] EMBL AK071060 [CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTCGAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAAGACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCACTTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCCGACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGGTTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGCGGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGCGGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCGGCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGGAATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTGTTGTTGTACTGATAGCGTGATTGAATTCATGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_83#0 ------------------------------------------------------------ consensus_83#1 CACACACACCCCTACCCGTCTCTGTTCATCTCCACATCTTGTCTTCTCGCTGTTGACTTC 60 consensus_83#0 --------------------------------------------------GATCCGAGAA 10 consensus_83#1 GAGCGGAGACTAGACTAGCTACTACTCGGAATGGGGAAGGAGATGAATCTGATCCGAGAA 120 ********** consensus_83#0 GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 70 consensus_83#1 GACGAGTACGGCGGCGGCGGCGTCGGGTTCGAGCCGACGGAGGACGAGCTGATGCTCCAC 180 ************************************************************ consensus_83#0 TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 130 consensus_83#1 TTCCTCCGTCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCCGTGGTGGAGGCC 240 ************************************************************ consensus_83#0 GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGCGGCGTGAGGTACGC 190 consensus_83#1 GACCCCTGCGGCGCGGCGCCGTGGGAGCTCCTGGCGCGGCACGGGAGGCGGGAGGAGGGG 300 ********************************************* **** **** * consensus_83#0 GTCCATACCCGCACCCCCTCTCG-------CCCTTCTTCTGTTCTTCTGCGTCGGCGAGT 243 consensus_83#1 TTCTTCTTCTCGGCGCGCGCGCGGAGGAAGCCCTCGGTGCGGCGGACCGTGGCGGGCTGC 360 ** * * * * * ** **** * * * * * *** * consensus_83#0 GCTCCCGCCCCCCGCAG--GTATCCCATTGCGTCTCGCCCCCCCCCGCGTTGTGTGTTTC 301 consensus_83#1 GGCGGCGGCGGTGGCGGCGGTGGCGCGTGGATGCACAGCTCCACCAAGAACGGGCAGTCC 420 * ** * ** * ** * * * * * * * ** ** * * * * consensus_83#0 GCGGCCATCC--GTCTCCCTAACTAGGTCCTTCACGG--GACCGCCATCCTCGCCGGCCC 357 consensus_83#1 GTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCTTCTACGTGCGC 480 * * ** ** * * * *** * ** * ** * * ** * consensus_83#0 CGTCTCCTCCAGGCTCGTTCGCCC-CCACGCGACTACGCGCCGATCCTCCTATGGTAGCG 416 consensus_83#1 GGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAG--TACGAGATCACCG 538 * * * * * * ** * * * ***** * * * * ** consensus_83#0 AGT-GTGTTCTCTCAGCCGTCTCTGACCTGCCTTCCAGGCGATCTGCGCGGCCCCGGGTC 475 consensus_83#1 ACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCC 598 * * * * * **** * * * *** ** * ** * * * consensus_83#0 CTGGTTGTGCGTGCTCGCCGGCCGCGGTCGACGCGACGCTAGTATGTCGG--AGTCCCGC 533 consensus_83#1 ATGTCAGGAAGAGCTCGAGGCCCCAAGCCGCCAAGATCTCTCCAGCCAAGCCAGCACGGC 658 ** * * ***** * ** * ** * ** * * ** * ** consensus_83#0 GGAACGCAGTCGGGCTCGGCCGTCGCACTGGACGTTGGAGAGTCCATACTAGGTGGGAGC 593 consensus_83#1 GGCGCA-AGCCCGCCGCCGCCGCCGCCGCGGATGTCCG-GGCTGCGTGATCCGGCCGACG 716 ** * ** * * * * **** *** *** ** * * * * * * * ** consensus_83#0 GCGAACTTTGCGGGGCGCGTCGCGCGT-GGGTCCCCGCTACACTCCTCGTGCCACTCGGC 652 consensus_83#1 GCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTTTGCTTTGG 776 *** * * ** ** * * ***** *** * ** * * * * ** * consensus_83#0 GGTCCGAGCGCTTCCCCAGAGGTGTGGAGGGCTCTTTACTCCGTACGAGTGTCGTGCATG 712 consensus_83#1 AATTGTGTTCCTTTGCTTTATTCCTCCTCTAGCATCTGC-CCATACATTCCGTGTG-ATG 834 * *** * * * * * * ** *** *** *** consensus_83#0 CTAGTCGTTAGTTCCGTGCGAGGGT-GTGATGTTGTGCGTTCGTGTATGCGGCTTGGCCC 771 consensus_83#1 AACACTGCGAATCAAATGGGACGTTTAAGATGTTGT-TGTT-GTACTGATAGCGTGATTG 892 * * * ** ** * * ******** *** ** ** ** consensus_83#0 AGTGCACGTCCCTTGCTGTCTCACAATCGCGCCCCGCGTTTGTAGCCATGGCCGGTTAGC 831 consensus_83#1 AATTCATGGCC------------------------------------------------- 903 * * ** * ** consensus_83#0 CTTGCTAACCCGAGAGGGTTCGTCCCTCCTCCACCAGTCATGCACCTGCCATATCGTGAC 891 consensus_83#1 ------------------------------------------------------------ consensus_83#0 TTCGGCGTCTCCGTTTCCGCGGCTTCAGCGCCGGTGCGTCGTAGCGTCGGCAGTCGGACG 951 consensus_83#1 ------------------------------------------------------------ consensus_83#0 CTCCCGGTACCCCGGACGTGAGTTTCTACACAGTCGCTGAATACTGCGTTCCTTGCCCGC 1011 consensus_83#1 ------------------------------------------------------------ consensus_83#0 GCACGGATGTTCCCGCAGGGCTAAGGTTGCGGGGGGCTGGCGTGCGTATATTTTGTGGGT 1071 consensus_83#1 ------------------------------------------------------------ consensus_83#0 GTTATCGTGGCTTT 1085 consensus_83#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||