These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAATCTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTCGGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATATGCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCATTCAGGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTGCCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATGCCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATGATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTTTCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCTTTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAAGGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACACTTGGGAG] [+] EMBL CA759079 [TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAATCTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTCGGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATATGCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCATTCAGGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTGCCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATGCCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATGATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTTTCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCTTTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAAGGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACACTTGGGAG] consensusID : consensus_830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAATCTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTCGTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATATGCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCATTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT] [+] EMBL D43106 [GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAATCTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTCGTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATATGCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCATTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_830#0 --TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAAT 58 consensus_830#1 GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAAT 60 *** ***** ************ ******* ***** ***** **** consensus_830#0 CTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTC 118 consensus_830#1 CTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTC 120 ******************* ************** ************************ consensus_830#0 GGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATAT 178 consensus_830#1 GTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATAT 180 * ****** ****************** ** ********* ******************* consensus_830#0 GCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCA 238 consensus_830#1 GCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCA 240 ************* ** ****************** **************** ** *** consensus_830#0 TTCA-GGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTG 297 consensus_830#1 TTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT------------------- 281 **** ******************************** *** consensus_830#0 CCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATG 357 consensus_830#1 ------------------------------------------------------------ consensus_830#0 CCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATG 417 consensus_830#1 ------------------------------------------------------------ consensus_830#0 ATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTT 477 consensus_830#1 ------------------------------------------------------------ consensus_830#0 TCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCT 537 consensus_830#1 ------------------------------------------------------------ consensus_830#0 TTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAA 597 consensus_830#1 ------------------------------------------------------------ consensus_830#0 GGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACA 657 consensus_830#1 ------------------------------------------------------------ consensus_830#0 CTTGGGAG 665 consensus_830#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||