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Oryza sativa
cluster # 8315 cluster # 8315       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8315#0 length = 796 sequences # 5  
consensusID : consensus_8315#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 796
fasta sequence 
                              [ATCAACGAGATCGCATCGCCTC-CGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAAAACCCAATCCCCCACCTGAAAAGAGCGAAAACTGCGCTTTTTGTCAGCTTGTGTTTTCATAACTTGCTGTGCTCTG]

[+] EMBL CB675898             [ATCAACGAGATCGCATCCCCTCTCGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAAAACCCAATCCCCCACCTGAAAAGAGCGAAAACTGCGCTTTTTGTCAGCTTGTGTTTTCATAACTTGCTGTGCTCTG]
[+] EMBL CB648500             [ATCAACGAGATCGCATCGCCTC CGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAAAACCCAATCCCCCACCTGAAAAGAGCGAAAACTGCGCTTTTTGTCAGCTTGTGTTTTC                  ]
[+] EMBL CB683387             [ATCAACGAGATCGCATCGCCTC CGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAAAACCCAATCCCCCACCTGAAAAGAGCGAAAACTGCGCTTTTTGTCAGCTTGTGTTTTC                  ]
[+] EMBL CB647674             [ATCAACGAGATCGCATCGCCTC CGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAA                                                                            ]
[-] EMBL AK063176             [ TCAACGAGATCGCATCGCCTC CGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATACCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGGTCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCCACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGTGTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAACCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAGCTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAATTTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATACTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGTTCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAATTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGAGAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGC                                                                                       ]




>consensus_8315#0
ATCAACGAGATCGCATCGCCTCCGCCGCCAACGCCGCCATTCGATTGATCTCCAAAGATA
CCTTTCTGTTCTTACAAGTTTTGTTTATATTCAACACACTCTCTCTCACTGGTTGCTGGG
TCCCAGCCAGGCTGTCGACAGAGCCATAGCCAGCTATTACTTACAAGCCCATTCAGGCCC
ACTCAGACGAACATTAGACTTCTTAATTCTAGTAGCTCGCTTCAGCGGCCTAGTAATTGT
GTTCTCCTGTGCTTCGTCAGACAACGGCAACTCCCTGGAAGCAGTATTGCTGCTGACAAA
CCCCACCCCTTGAAGACTGACTTGCCCCCAAGGCAGTGCAGAAGGGAAACGCTGCTTGAG
CTCTTCTTCATCTTCCCAGGTGGCTTCCACTGCAGGCAAATTAGACCAGCAAACAAGAAT
TTGACGGACAACTTTGTTACCTTTCTTCTGTATCCTTGTATCCAAGATCTGAACAGGATA
CTGAATATGATCTGTAATGTTGGGCAATTGAGACTGAATGGAGTGCTTAAAGTTCTGAGT
TCCTTTCAATTGCGAGACATGAAAAACCGGGTGAACCATGCTATCTGCTGGTAACTGCAA
TTTATAAGCCACCGATCCCACTTTGGACAAGATTTGATAAGGACCAAAATAACGGAAGGA
GAGCTTGTGATTGGCTCTTTTTGCCACCGAAGATTGCACATAAGGCTGCAGTTTAAGAAA
AACCCAATCCCCCACCTGAAAAGAGCGAAAACTGCGCTTTTTGTCAGCTTGTGTTTTCAT
AACTTGCTGTGCTCTG

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)