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Oryza sativa
cluster # 8354 cluster # 8354       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8354#0 length = 1660 sequences # 5  

consensusID : consensus_8354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1660
fasta sequence
                              [AGACGACTTGGCCACATCGTTCACACACTTCACTCACACGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTT-CC-AACA-ACAAT-GGCGT-CGTTCTCTCCT-CCT-CCCCGCTAAACCGCCGCC-GGCGTCCCGACCCGACGTGCTTGTTGCCTGCATCTGC-GACAAGGCGAGAAGAGAACGGGGGCC-CAAGCCCAC-GCCTCGCCGAATCGCGTC-GGTGCTTTGGATCGTGGCCATGGACATGGAGA-CGGAGAAGCAGCAGCAGCAGACGAGGTGCCCGCCTTGGCTCCAGGCGGCCATTGC-AGACATCGAGCAGCGGGTGCGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCTTCGCCGAGCGCGCCGAGAACTACTACCACAAGCGGCCGCAGCTGCTGGCGCTGCTCACCGACCTCCACCACCGCTACCTCTACCTCGCCGACCGCTACTCCCAGTCTCTCCTCGCCGCCAACAAGCCCTTCCACGCTGCCGCCGCCTCCTCCGACTGCGGCTCCTCCGACGTCGACGACCGCTCCTCCGACACCGGTAGCTCCCTCTCCTTCCAGCCTCCACCCACCACCAGCAGCAGTGTTCGTGATGCCGTTGACGCTGAGCTGGTGGTGGCGGAGCTGGTGGCCGCTTGGATTGATCGGGAGATTCTCGCCGACGAGGCGGAGCGGCGGAAGGCGGAGTCGGCGAGGAAGATCGAGCTGCAGGGGAGCCTCGTGGAGGTGCTGGAGTCGGAGAGGCTGGTGCTGCTCGGCGAGAACGCGCGGGTCGGGTTCCGCGCGTCGGCGGCCGAGGAGGAGGCGGCGGCCGCGGCGGCCGAGCTGGGTTACATGCGGCGGCGCGCGGCGGAGATGGCGCGGCTGGTGGTGAAGCTCCGGGAGGACCACCGGGTGTGCATGCTGGGTCGCAAGATCGAGGCGCTGCAGTCGCAGGTGTACGGGCTGGAGCTGCGGAACCGGGAGTGCTACGAGGCCATGGCGGCGTGGGAGGCGGAGAGGAAGGTGGGCCTCGCCGAGATCGAGCGGCTGCGCGCGGACAACAAGCGGCTGGCCGCGGAGGCCGCCATGGCCGCCGCGGCGAGGCGGAAGCGGAAGGGCGGGAACGGAAGCGGGTGGCTGTGGTGGGCGCGGGTGCGGATGGCGGCGGAGTGGACGCCGTGCGCGCCGGCGGTGAGGAAGGTCGGTGAGCGGATCAAGCACGGCGGCGGCCGGAAGGACGTCAAGTACAACGCCGGCGGCTGCTTCTGCCTCTAGTTTGGATTTTGGCGGGATGGTTTCTTTTTGGGTGGGTCAATGTTCATTTTACCCCTTGGATTGTGATGATATTGCGTGCAAGTATCAAGGAGGGGAGTAGTAATAGTAATCAGGTTATGGGATTATGCAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAATTAATTAGCGAGAGGTTAATTAGCTTGTAAAATGGATCAGTTGCATGTTGGTGGTAAAACTAGTGTACTGAGACTCAAGTATATAATATTATGACATGTTCAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAGAAA]

[+] EMBL AK101157             [AGACGACTTGGCCACATCGTTCACACACTTCACTCACAC    GAGAGAGAGAGAGAGAGAGACAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTT CC AACA ACAAT GGCGT CGTTCTCTCCT CCT CCCCGCTAAACCGCCGCC GGCGTCCCGACCCGACGTGCTTGTTGACTGCATCTGC GACAAGGCGAGAAGAGAACGGGGGCC CAAGCCCAC GCCTCGCCGAATCGCGTC GGTGCTTTGGATCGTGGCCATGGACATGGAGA CGGAGAAGCAGCAGCAGCAGACGAGGTGCCCGCCTTGGCTCCAGGCGGCCATTGC AGACATCGAGCAGCGGGTACGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCTTCGCCGAGCGCGCTGAGAACTACTACCACAAGCGGCCGCAGCTGCTGGCGCTGCTCACCGACCTCCACCACCGCTACCTCTACCTCGCCGACCGCTACTCCCAGTCTCTCCTCGCCGCCAACAAGCCCTTCCACGCTGCCGCCGCCTCCTCCGACTGCGGCTCCTCCGACGTCGACGACCGCTCCTCCGACACCGGTAGCTCCCTCTCCTTCCAGCCTCCACCCACCACCAGCAGCAGTGTTCGTGATGCCGTTGACGCTGAGCTGGTGGTGGCGGAGCTGGTGGCCGCTTGGATTGATCGGGAGATTCTCGCCGACGAGGCGGAGCGGCGGAAGGCGGAGTCGGCGAGGAAGATCGAGCTGCAGGGGAGCCTCGTGGAGGTGCTGGAGTCGGAGAGGCTGGTGCTGCTCGGCGAGAACGCGCGGGTCGGGTTCCGCGCGTCGGCGGCCGAGGAGGAGGCGGCGGCCGCGGCGGCCGAGCTGGGTTACATGCGGCGGCGCGCGGCGGAGATGGCGCGGCTGGTGGTGAAGCTCCGGGAGGACCACCGGGTGTGCATGCTGGGTCGCAAGATCGAGGCGCTGCAGTCGCAGGTGTACGGGCTGGAGCTGCGGAACCGGGAGTGCTACGAGGCCATGGCGGCGTGGGAGGCGGAGAGGAAGGTGGGCCTCGCCGAGATCGAGCGGCTGCGCGCGGACAACAAGCGGCTGGCCGCGGAGGCCGCCATGGCCGCCGCGGCGAGGCGGAAGCGGAAGGGCGGGAACGGAAGCGGGTGGCTGTGGTGGGCGCGGGTGCGGATGGCGGCGGAGTGGACGCCGTGCGCGCCGGCGGTGAGGAAGGTCGGTGAGCGGATCAAGCACGGCGGCGGCCGGAAGGACGTCAAGTACAACGCCGGCGGCTGCTTCTGCCTCTAGTTTGGATTTTGGCGGGATGGTTTCTTTTTGGGTGGGTCAATGTTCATTTTACCCCTTGGATTGTGATGATATTGCGTGCAAGTATCAAGGAGGGGAGTAGTAATAGTAATCAGGTTATGGGATTATGCAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAATTAATTAGCGAGAGGTTAATTAGCTTGTAAAATGGATCAGTTGCATGTTGGTGGTAAAACTAGTGTACTGAGACTCAAGTATATAATATTAT                                                                                                ]
[+] EMBL BI799140             [                         CACTTCACTCACACGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTTGCCAAACAGACAATGGGCGTGCGTTCTCTCCTGCCTGCCCCGCTAAACCGCCGCCAGGCGTCCCGACCCGACGTGCTTGTTGCCTGCATCTGC GACAAGGCGAGAAGAGAACGGGGGCC CAAGCCCACAGCCTCGCCGAATCGCGTCAGGTGCTTTGGATCGTGGCCATGGACATGGAGA CGGAGAAGCAGCA CAGCAGACGAGGTGCCCGCCTTGGCTCCA GCGGCCATTCCAAGACATCGAGCAGCGGGT CGGGC CT GCGGTGAGCGTGCCGGA GACGCGGCGGCGACGGCGACGGACCACTCCTTC CCGAGCGCGCCGAGAACTACTACCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI799925             [                          ACTTCACTCACACGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTT CC AACA ACAAT GGCGT CGTTCTCTCCT CCT CCCCGCTAAACCGCCGCC GGCGTCCCGACCCGACGTGCTTGTTGCCTGCATCTGCAGACAAGGCGAGAAGAGAACGGGGGCCACAAGCCCAC GCCTCGCCGAATCGCGTC GGTGCTTTGGATCGTGGCCATGGACATGGAGA CGGAGAAGCAGCAGCAGCAGACGAGGTGCCCGCCTTGGCTCCAGGCGGCCATTGC AGACATCGAGCAGCGGGTGCGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCTTCGCCGAGCGCGCCGAGAACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI799568             [                          ACTTCACTCACACGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTT CC AACA AC AT GGCGT CGTTCTCTCCT CCT CCCCGCTAAACCGCCGCC GGCGTCCCGACCCGACGTGCTTGTTGCCTGCATCTGC GACAAGGCGAGAAGAGAACGGGGGCC CAAGCCCAC GCCTCGCCGAATCGCGTC GGTGCTTTGGATCGTGGCCATGGACATGGAGACCGGAGAAGCAGCAGCAGCAGACGAGGTGCCCGCCTTGGCTCCAGGCGGCC TTGC AGACATCGAGCAGCGGGTGCGGGCGCTGGCGGTGAGCGTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCTTCGCCGAGCGCGCCGAGAACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF314774             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAGGTTATGGGATTATGCAGAGTGAGAGAGAGAGAGATAGAGAGAGAGAAATTAATTAGCGAGAGGTTAATTAACTTGTAAAATGGATCAGTTGCATGTTGGTGGTAAAACTAGTGTACTGAGACTCAAGTATATAATATTATGACATGTTCAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAGAAA]


>consensus_8354#0 AGACGACTTGGCCACATCGTTCACACACTTCACTCACACGAGAGAGAGAGAGAGAGAGAG AGAGAAAGCTCAGAGCTGCTTCCTCCCAAAAGCTTCTTCCAACAACAATGGCGTCGTTCT CTCCTCCTCCCCGCTAAACCGCCGCCGGCGTCCCGACCCGACGTGCTTGTTGCCTGCATC TGCGACAAGGCGAGAAGAGAACGGGGGCCCAAGCCCACGCCTCGCCGAATCGCGTCGGTG CTTTGGATCGTGGCCATGGACATGGAGACGGAGAAGCAGCAGCAGCAGACGAGGTGCCCG CCTTGGCTCCAGGCGGCCATTGCAGACATCGAGCAGCGGGTGCGGGCGCTGGCGGTGAGC GTGCCGGAGGACGCGGCGGCGACGGCGACGGACCACTCCTTCGCCGAGCGCGCCGAGAAC TACTACCACAAGCGGCCGCAGCTGCTGGCGCTGCTCACCGACCTCCACCACCGCTACCTC TACCTCGCCGACCGCTACTCCCAGTCTCTCCTCGCCGCCAACAAGCCCTTCCACGCTGCC GCCGCCTCCTCCGACTGCGGCTCCTCCGACGTCGACGACCGCTCCTCCGACACCGGTAGC TCCCTCTCCTTCCAGCCTCCACCCACCACCAGCAGCAGTGTTCGTGATGCCGTTGACGCT GAGCTGGTGGTGGCGGAGCTGGTGGCCGCTTGGATTGATCGGGAGATTCTCGCCGACGAG GCGGAGCGGCGGAAGGCGGAGTCGGCGAGGAAGATCGAGCTGCAGGGGAGCCTCGTGGAG GTGCTGGAGTCGGAGAGGCTGGTGCTGCTCGGCGAGAACGCGCGGGTCGGGTTCCGCGCG TCGGCGGCCGAGGAGGAGGCGGCGGCCGCGGCGGCCGAGCTGGGTTACATGCGGCGGCGC GCGGCGGAGATGGCGCGGCTGGTGGTGAAGCTCCGGGAGGACCACCGGGTGTGCATGCTG GGTCGCAAGATCGAGGCGCTGCAGTCGCAGGTGTACGGGCTGGAGCTGCGGAACCGGGAG TGCTACGAGGCCATGGCGGCGTGGGAGGCGGAGAGGAAGGTGGGCCTCGCCGAGATCGAG CGGCTGCGCGCGGACAACAAGCGGCTGGCCGCGGAGGCCGCCATGGCCGCCGCGGCGAGG CGGAAGCGGAAGGGCGGGAACGGAAGCGGGTGGCTGTGGTGGGCGCGGGTGCGGATGGCG GCGGAGTGGACGCCGTGCGCGCCGGCGGTGAGGAAGGTCGGTGAGCGGATCAAGCACGGC GGCGGCCGGAAGGACGTCAAGTACAACGCCGGCGGCTGCTTCTGCCTCTAGTTTGGATTT TGGCGGGATGGTTTCTTTTTGGGTGGGTCAATGTTCATTTTACCCCTTGGATTGTGATGA TATTGCGTGCAAGTATCAAGGAGGGGAGTAGTAATAGTAATCAGGTTATGGGATTATGCA GAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAATTAATTAGCGAGAGGTTAATTAGCTTGT AAAATGGATCAGTTGCATGTTGGTGGTAAAACTAGTGTACTGAGACTCAAGTATATAATA TTATGACATGTTCAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAGAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)